Variant report

Variant	rs62325967
Chromosome Location	chr4:54220470-54220471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:54220216..54222517-chr4:54223647..54225586,2	K562	blood:
2	chr4:54220179..54222765-chr4:54228443..54230623,2	K562	blood:
3	chr4:54215552..54217782-chr4:54219355..54221752,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10434434	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12233879	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12504531	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12505040	0.82[EUR][1000 genomes]
rs12506661	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12507598	0.82[EUR][1000 genomes]
rs17082654	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2271560	0.82[EUR][1000 genomes]
rs34354009	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56007140	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56921221	0.80[EUR][1000 genomes]
rs58860516	0.82[EUR][1000 genomes]
rs59651495	0.80[EUR][1000 genomes]
rs61015316	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62323220	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62323564	0.80[EUR][1000 genomes]
rs62323567	0.80[EUR][1000 genomes]
rs62323568	0.80[EUR][1000 genomes]
rs62323569	0.80[EUR][1000 genomes]
rs62325162	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325166	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62325214	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62325216	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62325219	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62325220	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62325221	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62325225	0.84[EUR][1000 genomes]
rs62325227	0.84[EUR][1000 genomes]
rs62325228	0.82[EUR][1000 genomes]
rs62325969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62325971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6820658	0.81[EUR][1000 genomes]
rs6826663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6850443	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6855607	0.81[EUR][1000 genomes]
rs6856301	0.81[EUR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54170600-54230600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:54188200-54231200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:54202200-54226000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:54210400-54225600	Weak transcription	Small Intestine	intestine
5	chr4:54212000-54220600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:54212000-54227200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:54212200-54220800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:54213600-54228600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:54213800-54230400	Weak transcription	Fetal Kidney	kidney
10	chr4:54214000-54221800	Weak transcription	Ovary	ovary
11	chr4:54214000-54230800	Weak transcription	Aorta	Aorta
12	chr4:54214000-54231200	Weak transcription	Lung	lung
13	chr4:54214200-54221800	Weak transcription	Pancreas	Pancrea
14	chr4:54214200-54221800	Weak transcription	Psoas Muscle	Psoas
15	chr4:54214200-54224000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:54214200-54228200	Weak transcription	Esophagus	oesophagus
17	chr4:54214200-54228200	Weak transcription	Fetal Brain Female	brain
18	chr4:54214200-54228200	Weak transcription	NH-A	brain
19	chr4:54214200-54228800	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:54214200-54229000	Weak transcription	HUVEC	blood vessel
21	chr4:54214200-54230000	Weak transcription	Fetal Heart	heart
22	chr4:54214200-54230000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:54214200-54230400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:54214200-54230800	Weak transcription	Brain Angular Gyrus	brain
25	chr4:54214200-54230800	Weak transcription	Brain Substantia Nigra	brain
26	chr4:54214200-54230800	Weak transcription	Fetal Lung	lung
27	chr4:54214200-54230800	Weak transcription	Right Ventricle	heart
28	chr4:54214200-54230800	Weak transcription	HSMMtube	muscle
29	chr4:54214200-54231000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:54214200-54231000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr4:54214200-54231200	Weak transcription	Spleen	Spleen
32	chr4:54214400-54224400	Weak transcription	A549	lung
33	chr4:54214400-54230200	Weak transcription	HMEC	breast
34	chr4:54214600-54230000	Weak transcription	Brain Anterior Caudate	brain
35	chr4:54214800-54230200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr4:54215000-54226800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr4:54215800-54221200	Weak transcription	K562	blood
38	chr4:54216000-54221000	Weak transcription	HepG2	liver
39	chr4:54216000-54221200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:54216600-54227600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr4:54218200-54220800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:54218800-54220800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr4:54218800-54230800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr4:54219000-54224800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr4:54219000-54225800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:54219000-54227600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr4:54219000-54228400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr4:54219200-54221800	Weak transcription	NHDF-Ad	bronchial
49	chr4:54219200-54224800	Weak transcription	Osteobl	bone
50	chr4:54219200-54225800	Weak transcription	Dnd41	blood

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