Variant report

Variant	rs6855607
Chromosome Location	chr4:54342658-54342659
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54341936..54344019-chr4:54348085..54349647,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10434434	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11723567	0.85[YRI][hapmap]
rs12233879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12504531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12505040	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12506661	0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12507598	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12512496	0.90[GIH][hapmap]
rs1435211	0.80[ASN][1000 genomes]
rs17082654	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2164265	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2271560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2292578	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34354009	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56007140	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56708336	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56921221	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58860516	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59651495	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60831969	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61015316	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61435460	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323220	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62323564	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323567	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62323568	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62323569	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62323573	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62323589	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323593	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323595	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323596	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323598	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323599	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323601	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323602	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62325162	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62325166	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62325214	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62325216	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62325219	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62325220	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62325221	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62325225	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62325227	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62325228	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62325967	0.81[EUR][1000 genomes]
rs62325969	0.81[EUR][1000 genomes]
rs62325971	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6820658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826663	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6845175	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6850443	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6856301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54320000-54353200	Weak transcription	Gastric	stomach
2	chr4:54327600-54347800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:54328200-54362000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:54328400-54362000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:54329600-54351000	Weak transcription	Adipose Nuclei	Adipose
7	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
8	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
9	chr4:54333000-54342800	Weak transcription	Esophagus	oesophagus
10	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
11	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:54333600-54342800	Weak transcription	Fetal Stomach	stomach
13	chr4:54336400-54342800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:54338400-54347400	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:54339200-54343400	Strong transcription	Liver	Liver
16	chr4:54339400-54343200	Strong transcription	Fetal Intestine Large	intestine
17	chr4:54339800-54342800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:54340200-54343200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr4:54340400-54343400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:54340600-54343200	Strong transcription	Fetal Intestine Small	intestine
21	chr4:54341200-54342800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:54341400-54343000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:54341400-54347800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:54341600-54342800	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr4:54341600-54343000	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr4:54341600-54343000	Enhancers	NHDF-Ad	bronchial
27	chr4:54341800-54342800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr4:54341800-54343000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:54341800-54343000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:54341800-54343000	Enhancers	HMEC	breast
31	chr4:54341800-54343800	Enhancers	HSMMtube	muscle
32	chr4:54341800-54345800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr4:54341800-54348000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:54342000-54343000	Strong transcription	Fetal Brain Female	brain
35	chr4:54342000-54343000	Enhancers	NH-A	brain
36	chr4:54342000-54343400	Strong transcription	Pancreas	Pancrea
37	chr4:54342000-54348200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:54342400-54342800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:54342400-54342800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:54342400-54343200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr4:54342400-54343400	Enhancers	Ovary	ovary
42	chr4:54342400-54343600	Genic enhancers	Placenta	Placenta
43	chr4:54342400-54343800	Weak transcription	Lung	lung
44	chr4:54342400-54347000	Enhancers	HSMM	muscle
45	chr4:54342600-54342800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:54342600-54342800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:54342600-54342800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr4:54342600-54342800	Flanking Active TSS	NHLF	lung
49	chr4:54342600-54342800	Flanking Active TSS	Osteobl	bone
50	chr4:54342600-54343000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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