Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54378239..54380309-chr4:54383066..54385489,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2164265	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2292578	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56708336	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56921221	0.83[ASN][1000 genomes]
rs60831969	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61435460	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62323564	0.80[ASN][1000 genomes]
rs62323567	0.83[ASN][1000 genomes]
rs62323568	0.83[ASN][1000 genomes]
rs62323569	0.83[ASN][1000 genomes]
rs62323573	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62323589	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62323593	0.83[ASN][1000 genomes]
rs62323595	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62323596	0.83[ASN][1000 genomes]
rs62323598	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62323599	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62323601	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62323602	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6820658	0.80[ASN][1000 genomes]
rs6855607	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
2	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:54363200-54384200	Weak transcription	Esophagus	oesophagus
4	chr4:54363800-54384000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:54366600-54384200	Weak transcription	Pancreas	Pancrea
6	chr4:54372800-54388400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:54374400-54399000	Weak transcription	Fetal Intestine Large	intestine
8	chr4:54374400-54421000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:54374800-54393600	Weak transcription	Placenta	Placenta
10	chr4:54375000-54393600	Weak transcription	Gastric	stomach
11	chr4:54375000-54398800	Weak transcription	Fetal Intestine Small	intestine
12	chr4:54377600-54384400	Weak transcription	Right Atrium	heart
13	chr4:54377600-54412200	Weak transcription	Aorta	Aorta

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