Variant report

Variant	rs2292578
Chromosome Location	chr4:54364673-54364674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10434434	0.87[EUR][1000 genomes]
rs11723567	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs12233879	0.91[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes]
rs12504531	0.91[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12505040	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12506661	0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12507598	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1435211	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17082654	0.87[EUR][1000 genomes]
rs2164265	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2271560	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34354009	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56007140	0.87[EUR][1000 genomes]
rs56708336	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56921221	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58860516	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59651495	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60831969	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61015316	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61435460	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323220	0.87[EUR][1000 genomes]
rs62323564	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323567	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323568	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323569	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323573	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323589	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323593	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323595	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323596	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323599	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323601	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323602	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62325162	0.87[EUR][1000 genomes]
rs62325166	0.87[EUR][1000 genomes]
rs62325214	0.87[EUR][1000 genomes]
rs62325216	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62325219	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62325220	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62325221	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62325225	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62325227	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62325228	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6820658	0.91[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6826663	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs6850443	0.82[EUR][1000 genomes]
rs6855607	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6856301	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
3	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
5	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
6	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
7	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:54355200-54378600	Weak transcription	Fetal Brain Male	brain
9	chr4:54356600-54373400	Weak transcription	Right Atrium	heart
10	chr4:54358600-54365400	Weak transcription	Lung	lung
11	chr4:54362000-54366600	Enhancers	Ovary	ovary
12	chr4:54362400-54374200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:54362600-54368000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr4:54362800-54365200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:54362800-54365200	Enhancers	Fetal Lung	lung
16	chr4:54362800-54366600	Enhancers	Fetal Muscle Leg	muscle
17	chr4:54362800-54373000	Weak transcription	Liver	Liver
18	chr4:54362800-54376000	Weak transcription	Brain Angular Gyrus	brain
19	chr4:54363200-54366200	Weak transcription	Pancreas	Pancrea
20	chr4:54363200-54373400	Weak transcription	Gastric	stomach
21	chr4:54363200-54384200	Weak transcription	Esophagus	oesophagus
22	chr4:54363400-54365400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:54363400-54365400	Enhancers	Fetal Stomach	stomach
24	chr4:54363400-54366800	Enhancers	HSMMtube	muscle
25	chr4:54363800-54364800	Weak transcription	Aorta	Aorta
26	chr4:54363800-54366200	Weak transcription	Fetal Kidney	kidney
27	chr4:54363800-54371400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr4:54363800-54371800	Weak transcription	Fetal Intestine Large	intestine
29	chr4:54363800-54384000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:54364000-54365400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:54364000-54366200	Weak transcription	Fetal Intestine Small	intestine
32	chr4:54364200-54365800	Weak transcription	HSMM	muscle
33	chr4:54364200-54366000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:54364200-54367600	Weak transcription	Placenta	Placenta
35	chr4:54364200-54373200	Weak transcription	Adipose Nuclei	Adipose
36	chr4:54364200-54373200	Weak transcription	NHDF-Ad	bronchial
37	chr4:54364400-54364800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:54364400-54366000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr4:54364400-54368400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:54364400-54371800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr4:54364600-54365800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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