Variant report

Variant	rs6856301
Chromosome Location	chr4:54342300-54342301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54341936..54344019-chr4:54348085..54349647,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10434434	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12233879	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12504531	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12505040	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12506661	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507598	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17082654	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2164265	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2271560	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292578	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34354009	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56007140	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56708336	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56921221	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58860516	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59651495	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60831969	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61015316	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61435460	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323220	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62323564	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323567	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323568	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323569	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323573	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323589	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323593	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323595	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323596	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323598	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323599	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323601	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323602	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62325162	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62325166	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62325214	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62325216	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62325219	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62325220	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62325221	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62325225	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62325227	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325228	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325967	0.81[EUR][1000 genomes]
rs62325969	0.81[EUR][1000 genomes]
rs62325971	0.81[EUR][1000 genomes]
rs6820658	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6826663	0.81[EUR][1000 genomes]
rs6845175	0.81[EUR][1000 genomes]
rs6850443	0.85[EUR][1000 genomes]
rs6855607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54320000-54353200	Weak transcription	Gastric	stomach
2	chr4:54327600-54347800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:54328200-54362000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:54328400-54362000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:54329600-54351000	Weak transcription	Adipose Nuclei	Adipose
7	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
8	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
9	chr4:54332000-54342400	Weak transcription	HSMM	muscle
10	chr4:54333000-54342800	Weak transcription	Esophagus	oesophagus
11	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
12	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:54333600-54342600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:54333600-54342800	Weak transcription	Fetal Stomach	stomach
15	chr4:54336400-54342800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:54338400-54347400	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:54339200-54343400	Strong transcription	Liver	Liver
18	chr4:54339400-54342400	Strong transcription	Placenta	Placenta
19	chr4:54339400-54343200	Strong transcription	Fetal Intestine Large	intestine
20	chr4:54339800-54342800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:54340200-54343200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr4:54340400-54343400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:54340600-54343200	Strong transcription	Fetal Intestine Small	intestine
24	chr4:54341200-54342800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr4:54341400-54342600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:54341400-54343000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:54341400-54347800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:54341600-54342600	Enhancers	NHLF	lung
29	chr4:54341600-54342800	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr4:54341600-54343000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr4:54341600-54343000	Enhancers	NHDF-Ad	bronchial
32	chr4:54341800-54342400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:54341800-54342400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:54341800-54342600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr4:54341800-54342600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr4:54341800-54342600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:54341800-54342600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:54341800-54342600	Enhancers	Muscle Satellite Cultured Cells	--
39	chr4:54341800-54342600	Enhancers	Osteobl	bone
40	chr4:54341800-54342800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr4:54341800-54343000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:54341800-54343000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:54341800-54343000	Enhancers	HMEC	breast
44	chr4:54341800-54343800	Enhancers	HSMMtube	muscle
45	chr4:54341800-54345800	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr4:54341800-54348000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:54342000-54343000	Strong transcription	Fetal Brain Female	brain
48	chr4:54342000-54343000	Enhancers	NH-A	brain
49	chr4:54342000-54343400	Strong transcription	Pancreas	Pancrea
50	chr4:54342000-54348200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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