Variant report

Variant	rs68177453
Chromosome Location	chr3:155230863-155230864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155230089..155232797-chr3:155242934..155246077,3	K562	blood:
2	chr3:155221892..155224529-chr3:155230132..155232414,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114805	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16825042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2872949	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34050852	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3942389	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58785850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66576244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66856514	0.92[EUR][1000 genomes]
rs66977664	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67476117	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154231	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934591	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155196200-155231600	Weak transcription	Gastric	stomach
2	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:155210800-155237600	Weak transcription	Fetal Kidney	kidney
4	chr3:155218600-155236600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:155229800-155232200	ZNF genes & repeats	Dnd41	blood
6	chr3:155230000-155231000	Enhancers	Placenta	Placenta
7	chr3:155230000-155231200	Strong transcription	A549	lung
8	chr3:155230000-155231800	Enhancers	NHEK	skin
9	chr3:155230000-155232200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:155230000-155232400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:155230000-155232400	Strong transcription	Thymus	Thymus
12	chr3:155230000-155232600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:155230200-155231000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:155230200-155231400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:155230200-155232400	Strong transcription	Duodenum Mucosa	Duodenum
16	chr3:155230200-155232400	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr3:155230400-155241000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:155230600-155231000	Flanking Active TSS	HMEC	breast
19	chr3:155230600-155231600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:155230600-155231800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:155230600-155232000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:155230600-155232200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:155230600-155232200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:155230600-155232200	Strong transcription	Fetal Intestine Large	intestine
25	chr3:155230600-155232400	Strong transcription	Fetal Thymus	thymus
26	chr3:155230600-155232600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr3:155230600-155234600	Weak transcription	Fetal Intestine Small	intestine
28	chr3:155230600-155241000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:155230600-155241200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:155230600-155242800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:155230600-155243800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:155230600-155249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr3:155230800-155231000	Strong transcription	Pancreas	Pancrea
35	chr3:155230800-155231800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:155230800-155235400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:155230800-155235400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:155230800-155238000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr3:155230800-155241200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:155230800-155244400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr3:155230800-155248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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