Variant report

Variant	rs16825042
Chromosome Location	chr3:155217347-155217348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10513478	0.91[CEU][hapmap];1.00[CHD][hapmap]
rs16825046	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825055	0.91[CEU][hapmap];1.00[CHD][hapmap]
rs16825058	0.91[CEU][hapmap]
rs2872949	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34050852	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3942389	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58785850	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66576244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66856514	0.92[EUR][1000 genomes]
rs66977664	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67476117	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790399	0.91[CEU][hapmap];1.00[CHD][hapmap]
rs68177453	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934591	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155195000-155230400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:155196200-155231600	Weak transcription	Gastric	stomach
3	chr3:155197000-155218800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:155198400-155230600	Weak transcription	Fetal Intestine Large	intestine
5	chr3:155198800-155221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:155198800-155230800	Weak transcription	Pancreas	Pancrea
7	chr3:155199000-155229800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:155200600-155230200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:155200800-155218000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:155200800-155223600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:155202400-155230000	Weak transcription	A549	lung
13	chr3:155205400-155221800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:155206800-155224000	Strong transcription	Dnd41	blood
15	chr3:155208000-155230200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:155210400-155220400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:155210600-155222600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:155210800-155237600	Weak transcription	Fetal Kidney	kidney
19	chr3:155212800-155230000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:155213600-155218400	Weak transcription	Fetal Stomach	stomach
21	chr3:155214600-155219400	Strong transcription	Fetal Thymus	thymus
22	chr3:155214600-155219400	Weak transcription	Small Intestine	intestine
23	chr3:155214800-155218600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:155215000-155230200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:155215000-155230200	Weak transcription	Fetal Intestine Small	intestine
26	chr3:155215800-155218600	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:155215800-155218600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:155215800-155218600	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr3:155216000-155219200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr3:155216400-155217800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:155216400-155218400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:155216600-155230200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:155216800-155217400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr3:155217000-155218000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:155217000-155218000	Weak transcription	NHDF-Ad	bronchial
36	chr3:155217000-155218200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:155217000-155218200	Weak transcription	Thymus	Thymus
38	chr3:155217000-155218600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr3:155217000-155221400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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