Variant report

Variant	rs16825055
Chromosome Location	chr3:155230466-155230467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155230089..155232797-chr3:155242934..155246077,3	K562	blood:
2	chr3:155221892..155224529-chr3:155230132..155232414,2	MCF-7	breast:
3	chr3:155228995..155230822-chr3:155233226..155235374,2	K562	blood:

Variant related genes	Relation type
ENSG00000114805	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513478	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825042	0.91[CEU][hapmap];1.00[CHD][hapmap]
rs16825046	0.89[CEU][hapmap]
rs16825058	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825113	0.91[GIH][hapmap]
rs17454899	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34050852	0.91[CEU][hapmap];1.00[CHD][hapmap]
rs3914781	0.84[GIH][hapmap];0.82[MEX][hapmap]
rs3942389	0.91[CEU][hapmap]
rs4389522	0.91[GIH][hapmap];0.82[MEX][hapmap]
rs6790399	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154230	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154233	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154239	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154240	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630469	0.91[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155196200-155231600	Weak transcription	Gastric	stomach
2	chr3:155198400-155230600	Weak transcription	Fetal Intestine Large	intestine
3	chr3:155198800-155230800	Weak transcription	Pancreas	Pancrea
4	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:155210800-155237600	Weak transcription	Fetal Kidney	kidney
6	chr3:155218600-155236600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:155229800-155230600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:155229800-155232200	ZNF genes & repeats	Dnd41	blood
9	chr3:155230000-155230600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:155230000-155230600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr3:155230000-155230600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:155230000-155230600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
13	chr3:155230000-155230600	Enhancers	HMEC	breast
14	chr3:155230000-155230800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:155230000-155230800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:155230000-155230800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:155230000-155231000	Enhancers	Placenta	Placenta
18	chr3:155230000-155231200	Strong transcription	A549	lung
19	chr3:155230000-155231800	Enhancers	NHEK	skin
20	chr3:155230000-155232200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:155230000-155232400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:155230000-155232400	Strong transcription	Thymus	Thymus
23	chr3:155230000-155232600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:155230200-155230600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr3:155230200-155230600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:155230200-155230600	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr3:155230200-155230600	Genic enhancers	Fetal Thymus	thymus
28	chr3:155230200-155230800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:155230200-155230800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:155230200-155231000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:155230200-155231400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:155230200-155232400	Strong transcription	Duodenum Mucosa	Duodenum
33	chr3:155230200-155232400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr3:155230400-155230600	Enhancers	H9 Cell Line	embryonic stem cell
35	chr3:155230400-155230600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:155230400-155230600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
37	chr3:155230400-155230600	Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr3:155230400-155230600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr3:155230400-155230600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
40	chr3:155230400-155230800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr3:155230400-155230800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr3:155230400-155230800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr3:155230400-155230800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:155230400-155230800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr3:155230400-155241000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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