The 2.0 version of rSNPBase

Variant report

Variant rs17454899
Chromosome Location chr3:155230342-155230343
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:155195000-155230400 Weak transcription H9 Cell Line embryonic stem cell
2 chr3:155196200-155231600 Weak transcription Gastric stomach
3 chr3:155198400-155230600 Weak transcription Fetal Intestine Large intestine
4 chr3:155198800-155230800 Weak transcription Pancreas Pancrea
5 chr3:155200800-155251400 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr3:155210800-155237600 Weak transcription Fetal Kidney kidney
7 chr3:155218600-155236600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr3:155229800-155230400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr3:155229800-155230600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr3:155229800-155232200 ZNF genes & repeats Dnd41 blood
11 chr3:155230000-155230400 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
12 chr3:155230000-155230400 Flanking Active TSS HUES6 Cell Line embryonic stem cell
13 chr3:155230000-155230400 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
14 chr3:155230000-155230400 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
15 chr3:155230000-155230600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
16 chr3:155230000-155230600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
17 chr3:155230000-155230600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr3:155230000-155230600 ZNF genes & repeats Rectal Mucosa Donor 31 rectum
19 chr3:155230000-155230600 Enhancers HMEC breast
20 chr3:155230000-155230800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr3:155230000-155230800 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
22 chr3:155230000-155230800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr3:155230000-155231000 Enhancers Placenta Placenta
24 chr3:155230000-155231200 Strong transcription A549 lung
25 chr3:155230000-155231800 Enhancers NHEK skin
26 chr3:155230000-155232200 Enhancers Breast Myoepithelial Primary Cells Breast
27 chr3:155230000-155232400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr3:155230000-155232400 Strong transcription Thymus Thymus
29 chr3:155230000-155232600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr3:155230200-155230400 Weak transcription ES-WA7 Cell Line embryonic stem cell
31 chr3:155230200-155230400 Genic enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr3:155230200-155230400 Enhancers HUES64 Cell Line embryonic stem cell
33 chr3:155230200-155230400 Flanking Bivalent TSS/Enh iPS-15b Cell Line embryonic stem cell
34 chr3:155230200-155230600 Enhancers H1 Cell Line embryonic stem cell
35 chr3:155230200-155230600 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr3:155230200-155230600 ZNF genes & repeats Fetal Intestine Small intestine
37 chr3:155230200-155230600 Genic enhancers Fetal Thymus thymus
38 chr3:155230200-155230800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
39 chr3:155230200-155230800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr3:155230200-155231000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr3:155230200-155231400 Weak transcription HUES48 Cell Line embryonic stem cell
42 chr3:155230200-155232400 Strong transcription Duodenum Mucosa Duodenum
43 chr3:155230200-155232400 Strong transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015