Variant report

Variant	rs4389522
Chromosome Location	chr3:155285327-155285328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155285221..155287488-chr3:155402814..155405461,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10513478	1.00[GIH][hapmap]
rs1074496	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11926902	1.00[EUR][1000 genomes]
rs11927334	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1610251	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16825055	0.91[GIH][hapmap];0.82[MEX][hapmap]
rs16825084	0.85[CEU][hapmap]
rs16825099	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs16825113	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs16825341	0.85[CEU][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap]
rs17347364	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17348181	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs17413466	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17414074	0.80[EUR][1000 genomes]
rs17414810	0.82[CEU][hapmap]
rs1850850	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2320186	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs3914781	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs60170070	0.98[EUR][1000 genomes]
rs6441010	0.85[CEU][hapmap]
rs67668024	0.93[EUR][1000 genomes]
rs6790399	0.91[GIH][hapmap]
rs73154261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154265	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73154266	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73154268	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73154269	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73154284	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73154298	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73154302	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73156504	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73156517	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73156519	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73156544	0.80[EUR][1000 genomes]
rs73156548	0.89[AMR][1000 genomes]
rs73156551	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73156552	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73156561	0.80[EUR][1000 genomes]
rs7610818	0.88[EUR][1000 genomes]
rs7611680	0.80[EUR][1000 genomes]
rs7617369	0.80[EUR][1000 genomes]
rs7630469	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs7633176	1.00[CEU][hapmap]
rs7633226	0.80[EUR][1000 genomes]
rs7640692	0.98[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155257000-155289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:155259400-155289800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:155266200-155287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:155272200-155302800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:155273400-155312800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:155274200-155286000	Weak transcription	Pancreas	Pancrea
8	chr3:155274200-155293800	Weak transcription	Stomach Mucosa	stomach
9	chr3:155275600-155311800	Weak transcription	Fetal Intestine Large	intestine
10	chr3:155275600-155312800	Weak transcription	Fetal Intestine Small	intestine
11	chr3:155278400-155289800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:155278400-155302800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:155278600-155287400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:155278800-155289600	Weak transcription	A549	lung
15	chr3:155282000-155295600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:155283000-155290800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:155283000-155315000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:155283200-155288200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:155283400-155285400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:155285200-155285800	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links