Variant report

Variant	rs16825099
Chromosome Location	chr3:155286285-155286286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155285221..155287488-chr3:155402814..155405461,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1074496	0.91[EUR][1000 genomes]
rs11925864	1.00[CHB][hapmap]
rs11926902	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11927334	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1610251	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16825048	1.00[CHB][hapmap]
rs16825084	1.00[CEU][hapmap]
rs16825113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825235	1.00[CHB][hapmap]
rs16825249	1.00[CHB][hapmap]
rs16825341	1.00[CEU][hapmap]
rs17347364	0.91[EUR][1000 genomes]
rs17348181	1.00[CEU][hapmap]
rs17413466	0.91[EUR][1000 genomes]
rs17414810	1.00[CEU][hapmap]
rs1850850	0.96[EUR][1000 genomes]
rs2320186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3914781	1.00[CEU][hapmap]
rs4389522	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs60170070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441010	1.00[CEU][hapmap]
rs67668024	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154261	0.98[EUR][1000 genomes]
rs73154265	0.96[EUR][1000 genomes]
rs73154266	0.94[EUR][1000 genomes]
rs73154268	0.96[EUR][1000 genomes]
rs73154269	0.96[EUR][1000 genomes]
rs73154284	0.91[EUR][1000 genomes]
rs73154298	0.91[EUR][1000 genomes]
rs73154302	0.91[EUR][1000 genomes]
rs73156504	0.91[EUR][1000 genomes]
rs73156517	0.91[EUR][1000 genomes]
rs73156519	0.91[EUR][1000 genomes]
rs7610818	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633176	1.00[CEU][hapmap]
rs7640692	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645934	1.00[CHB][hapmap]
rs934591	1.00[CHB][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155257000-155289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:155259400-155289800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:155266200-155287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:155272200-155302800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:155273400-155312800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:155274200-155293800	Weak transcription	Stomach Mucosa	stomach
8	chr3:155275600-155311800	Weak transcription	Fetal Intestine Large	intestine
9	chr3:155275600-155312800	Weak transcription	Fetal Intestine Small	intestine
10	chr3:155278400-155289800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:155278400-155302800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:155278600-155287400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:155278800-155289600	Weak transcription	A549	lung
14	chr3:155282000-155295600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:155283000-155290800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:155283000-155315000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr3:155283200-155288200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:155285400-155286800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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