Variant report

Variant	rs7645934
Chromosome Location	chr3:155394895-155394896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11915975	1.00[MEX][hapmap]
rs11925864	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16825048	1.00[CHB][hapmap]
rs16825099	1.00[CHB][hapmap]
rs16825113	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16825235	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825249	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825341	0.81[LWK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs17349490	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2320186	1.00[CHB][hapmap]
rs359571	1.00[CHD][hapmap]
rs57296021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58819809	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61493707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66459918	0.85[AFR][1000 genomes]
rs73007057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630469	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs934591	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155383400-155395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155393200-155395000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155393800-155395000	Enhancers	Stomach Mucosa	stomach
4	chr3:155394400-155395200	Enhancers	Fetal Intestine Small	intestine
5	chr3:155394600-155395000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:155394600-155395000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:155394600-155395000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:155394600-155395000	Enhancers	Duodenum Mucosa	Duodenum
9	chr3:155394600-155395000	Enhancers	Fetal Brain Male	brain
10	chr3:155394600-155395000	Weak transcription	Fetal Intestine Large	intestine
11	chr3:155394600-155395000	Enhancers	Fetal Lung	lung
12	chr3:155394600-155395000	Enhancers	Rectal Smooth Muscle	rectum
13	chr3:155394600-155395000	Enhancers	HepG2	liver
14	chr3:155394600-155395200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
15	chr3:155394600-155395200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:155394600-155395200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:155394600-155400000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:155394800-155395000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr3:155394800-155395000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:155394800-155395000	Enhancers	Brain Substantia Nigra	brain
21	chr3:155394800-155395000	Enhancers	Fetal Kidney	kidney
22	chr3:155394800-155395000	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr3:155394800-155395000	Enhancers	A549	lung
24	chr3:155394800-155395200	Enhancers	Brain Anterior Caudate	brain
25	chr3:155394800-155395200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr3:155394800-155399400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr3:155394800-155399400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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