Variant report

Variant	rs16825235
Chromosome Location	chr3:155390917-155390918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11925864	1.00[CHB][hapmap]
rs16825048	1.00[CHB][hapmap]
rs16825099	1.00[CHB][hapmap]
rs16825113	1.00[CHB][hapmap]
rs16825249	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825341	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs17349490	1.00[CHB][hapmap]
rs2320186	1.00[CHB][hapmap]
rs57296021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58819809	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61493707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66459918	0.85[AFR][1000 genomes]
rs73007057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630469	1.00[CHB][hapmap]
rs7645934	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934591	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155383400-155393800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:155383400-155394000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:155383400-155395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155383600-155394000	Weak transcription	Pancreas	Pancrea
5	chr3:155385200-155394000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:155389600-155393000	Enhancers	HepG2	liver
7	chr3:155390000-155391800	Enhancers	Fetal Intestine Small	intestine
8	chr3:155390000-155392400	Enhancers	Fetal Intestine Large	intestine
9	chr3:155390400-155391800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:155390600-155393800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:155390800-155393200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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