Variant report

Variant	rs16825048
Chromosome Location	chr3:155219263-155219264
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11918635	1.00[CEU][hapmap]
rs11925808	1.00[CEU][hapmap]
rs11925864	1.00[CHB][hapmap]
rs11928539	1.00[CEU][hapmap]
rs16824965	1.00[CEU][hapmap]
rs16824992	1.00[CEU][hapmap]
rs16825099	1.00[CHB][hapmap]
rs16825113	1.00[CHB][hapmap]
rs16825235	1.00[CHB][hapmap]
rs16825249	1.00[CHB][hapmap]
rs2320186	1.00[CHB][hapmap]
rs4630983	1.00[CEU][hapmap]
rs6440982	1.00[CEU][hapmap]
rs6440983	1.00[CEU][hapmap]
rs6440984	1.00[CEU][hapmap]
rs6764943	1.00[CEU][hapmap]
rs6777732	1.00[CEU][hapmap]
rs6791188	1.00[CEU][hapmap]
rs6791222	1.00[CEU][hapmap]
rs6802130	1.00[CEU][hapmap]
rs73013261	0.86[EUR][1000 genomes]
rs73013268	0.86[EUR][1000 genomes]
rs73013272	0.86[EUR][1000 genomes]
rs73874832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630469	1.00[CHB][hapmap]
rs7637223	1.00[CEU][hapmap]
rs7645934	1.00[CHB][hapmap]
rs934591	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155195000-155230400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:155196200-155231600	Weak transcription	Gastric	stomach
3	chr3:155198400-155230600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:155198800-155221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:155198800-155230800	Weak transcription	Pancreas	Pancrea
6	chr3:155199000-155229800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:155200600-155230200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:155200800-155223600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:155202400-155230000	Weak transcription	A549	lung
11	chr3:155205400-155221800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:155206800-155224000	Strong transcription	Dnd41	blood
13	chr3:155208000-155230200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:155210400-155220400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:155210600-155222600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:155210800-155237600	Weak transcription	Fetal Kidney	kidney
17	chr3:155212800-155230000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:155214600-155219400	Strong transcription	Fetal Thymus	thymus
19	chr3:155214600-155219400	Weak transcription	Small Intestine	intestine
20	chr3:155215000-155230200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:155215000-155230200	Weak transcription	Fetal Intestine Small	intestine
22	chr3:155216600-155230200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr3:155217000-155221400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:155217400-155230000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:155218600-155220400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:155218600-155221600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:155218600-155222200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:155218600-155229800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:155218600-155230000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:155218600-155230000	Weak transcription	Thymus	Thymus
31	chr3:155218600-155236600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:155219200-155222400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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