Variant report

Variant	rs73013268
Chromosome Location	chr3:155254908-155254909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11915975	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11924434	1.00[AFR][1000 genomes]
rs11926950	1.00[AFR][1000 genomes]
rs11927134	1.00[AFR][1000 genomes]
rs11927323	0.87[AFR][1000 genomes]
rs16825048	0.86[EUR][1000 genomes]
rs57617660	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57648282	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61570538	0.88[AFR][1000 genomes]
rs72996912	0.87[AFR][1000 genomes]
rs72996914	0.83[AFR][1000 genomes]
rs73013261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73013272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73013277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73013284	1.00[AFR][1000 genomes]
rs73013286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73874832	0.86[EUR][1000 genomes]
rs7628745	0.87[AFR][1000 genomes]
rs7638407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
4	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:155244800-155258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:155248400-155260000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:155250200-155258800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:155250400-155258600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:155250800-155256800	Weak transcription	Primary T cells from cord blood	blood
10	chr3:155252400-155258800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:155253400-155259000	Strong transcription	Dnd41	blood
12	chr3:155253600-155273600	Weak transcription	Gastric	stomach
13	chr3:155253800-155255400	Weak transcription	Stomach Mucosa	stomach
14	chr3:155253800-155266200	Weak transcription	Fetal Kidney	kidney
15	chr3:155254000-155255000	Strong transcription	Fetal Thymus	thymus
16	chr3:155254000-155258800	Weak transcription	Thymus	Thymus
17	chr3:155254000-155259000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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