Variant report

Variant	rs73013261
Chromosome Location	chr3:155252179-155252180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11915975	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11924434	1.00[AFR][1000 genomes]
rs11926950	1.00[AFR][1000 genomes]
rs11927134	1.00[AFR][1000 genomes]
rs11927323	0.87[AFR][1000 genomes]
rs16825048	0.86[EUR][1000 genomes]
rs57617660	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57648282	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61570538	0.88[AFR][1000 genomes]
rs72996912	0.87[AFR][1000 genomes]
rs72996914	0.83[AFR][1000 genomes]
rs73013268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73013272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73013277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73013284	1.00[AFR][1000 genomes]
rs73013286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73874832	0.86[EUR][1000 genomes]
rs7628745	0.87[AFR][1000 genomes]
rs7638407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:155231200-155253000	Weak transcription	A549	lung
3	chr3:155232200-155253000	Weak transcription	Fetal Intestine Large	intestine
4	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
6	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:155244800-155258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:155247200-155253000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr3:155248400-155260000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:155249200-155253800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:155249400-155252800	Weak transcription	HepG2	liver
12	chr3:155249400-155254000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:155249800-155254000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:155250200-155258800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr3:155250400-155258600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:155250600-155252600	Strong transcription	Dnd41	blood
17	chr3:155250600-155253000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:155250600-155253200	Weak transcription	Gastric	stomach
19	chr3:155250800-155256800	Weak transcription	Primary T cells from cord blood	blood
20	chr3:155251200-155252400	Strong transcription	Thymus	Thymus
21	chr3:155251400-155253600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:155251600-155253600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr3:155251800-155254200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr3:155252000-155252400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:155252000-155252400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:155252000-155252600	Strong transcription	Fetal Thymus	thymus
27	chr3:155252000-155252800	Weak transcription	Fetal Intestine Small	intestine

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