Variant report

Variant	rs7638407
Chromosome Location	chr3:155265680-155265681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11915975	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11924434	1.00[AFR][1000 genomes]
rs11926950	1.00[AFR][1000 genomes]
rs11927134	1.00[AFR][1000 genomes]
rs11927323	0.87[AFR][1000 genomes]
rs57617660	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57648282	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61570538	0.88[AFR][1000 genomes]
rs72996912	0.87[AFR][1000 genomes]
rs72996914	0.83[AFR][1000 genomes]
rs73013261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013284	1.00[AFR][1000 genomes]
rs73013286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7628745	0.87[AFR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
3	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:155253600-155273600	Weak transcription	Gastric	stomach
5	chr3:155253800-155266200	Weak transcription	Fetal Kidney	kidney
6	chr3:155257000-155289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:155257400-155266000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:155259400-155266000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155259400-155266000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:155259400-155284800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:155259400-155289800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:155259600-155271400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:155259800-155265800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:155259800-155265800	Weak transcription	Dnd41	blood
15	chr3:155259800-155266000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:155259800-155266000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:155259800-155266600	Weak transcription	Thymus	Thymus
18	chr3:155259800-155278000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:155260000-155265800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:155260000-155271600	Weak transcription	Fetal Intestine Small	intestine
21	chr3:155260000-155278200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:155260200-155266000	Weak transcription	Fetal Thymus	thymus
23	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr3:155263600-155270200	Weak transcription	Fetal Intestine Large	intestine
25	chr3:155264200-155272800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:155264400-155282200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:155264600-155266800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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