Variant report

Variant	rs73007057
Chromosome Location	chr3:155395264-155395265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16825235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825341	0.85[AFR][1000 genomes]
rs57296021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58819809	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61493707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66459918	0.85[AFR][1000 genomes]
rs73007059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155383400-155395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155394600-155400000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:155394800-155399400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:155394800-155399400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:155395000-155399000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:155395000-155399600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:155395000-155400000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:155395000-155400200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155395000-155416800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:155395200-155395400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr3:155395200-155399200	Weak transcription	Fetal Intestine Large	intestine
12	chr3:155395200-155399600	Weak transcription	Fetal Intestine Small	intestine
13	chr3:155395200-155412000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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