Variant report

Variant	rs16825084
Chromosome Location	chr3:155267180-155267181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10513478	0.83[AMR][1000 genomes]
rs11927334	0.85[CEU][hapmap]
rs12628990	0.85[CEU][hapmap]
rs1610251	0.85[CEU][hapmap]
rs16825099	1.00[CEU][hapmap]
rs16825113	0.85[CEU][hapmap]
rs16825341	1.00[CEU][hapmap]
rs17346518	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17348181	1.00[CEU][hapmap]
rs17414074	1.00[CEU][hapmap]
rs17414810	1.00[CEU][hapmap]
rs2320186	0.85[CEU][hapmap]
rs3914781	0.85[CEU][hapmap];0.96[EUR][1000 genomes]
rs4389522	0.85[CEU][hapmap]
rs6441010	1.00[CEU][hapmap]
rs73154247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73154252	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154255	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7630469	0.85[CEU][hapmap]
rs7633176	0.82[CEU][hapmap];0.96[EUR][1000 genomes]

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
3	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:155253600-155273600	Weak transcription	Gastric	stomach
5	chr3:155257000-155289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:155259400-155284800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:155259400-155289800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:155259600-155271400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:155259800-155278000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:155260000-155271600	Weak transcription	Fetal Intestine Small	intestine
11	chr3:155260000-155278200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:155263600-155270200	Weak transcription	Fetal Intestine Large	intestine
14	chr3:155264200-155272800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:155264400-155282200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:155265800-155273000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:155266000-155267400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr3:155266000-155267800	Enhancers	Primary hematopoietic stem cells	blood
19	chr3:155266000-155268000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:155266000-155268000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:155266000-155268000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:155266000-155277800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:155266200-155268000	Enhancers	Primary T cells from cord blood	blood
24	chr3:155266200-155268800	Enhancers	Fetal Kidney	kidney
25	chr3:155266200-155287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:155266400-155267600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:155266400-155268000	Enhancers	Primary B cells from cord blood	blood
28	chr3:155266400-155271200	Weak transcription	A549	lung
29	chr3:155266400-155271400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:155266600-155267400	Genic enhancers	Fetal Thymus	thymus
31	chr3:155266600-155267800	Enhancers	Primary B cells from peripheral blood	blood
32	chr3:155266600-155267800	Enhancers	Thymus	Thymus
33	chr3:155266800-155267800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:155266800-155268600	Genic enhancers	Dnd41	blood
35	chr3:155266800-155272200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:155266800-155274400	Weak transcription	Lung	lung
37	chr3:155267000-155267800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links