Variant report

Variant	rs17414074
Chromosome Location	chr3:155398278-155398279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155390004..155392407-chr3:155396683..155399623,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1074496	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11926902	0.80[EUR][1000 genomes]
rs11927334	0.82[EUR][1000 genomes]
rs12628990	0.88[EUR][1000 genomes]
rs1610251	0.80[EUR][1000 genomes]
rs16825084	1.00[CEU][hapmap]
rs16825113	0.81[EUR][1000 genomes]
rs16825341	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17347364	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17348181	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17413466	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17414810	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1850850	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4389522	0.80[EUR][1000 genomes]
rs6441010	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6441011	0.96[EUR][1000 genomes]
rs66459918	0.95[EUR][1000 genomes]
rs67668024	0.81[EUR][1000 genomes]
rs6769113	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6794329	0.88[EUR][1000 genomes]
rs73154261	0.80[EUR][1000 genomes]
rs73154265	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73154266	0.80[EUR][1000 genomes]
rs73154268	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73154269	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73154284	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73154298	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73154302	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73156504	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73156517	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73156519	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73156544	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156548	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73156551	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156552	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73156578	0.88[EUR][1000 genomes]
rs7611680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7617369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7633226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155394600-155400000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:155394800-155399400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:155394800-155399400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:155395000-155399000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:155395000-155399600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:155395000-155400000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:155395000-155400200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:155395000-155416800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:155395200-155399200	Weak transcription	Fetal Intestine Large	intestine
10	chr3:155395200-155399600	Weak transcription	Fetal Intestine Small	intestine
11	chr3:155395200-155412000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:155396200-155399200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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