Variant report

Variant	rs73156578
Chromosome Location	chr3:155416451-155416452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12628990	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825341	0.90[EUR][1000 genomes]
rs17348181	0.88[EUR][1000 genomes]
rs17414074	0.88[EUR][1000 genomes]
rs17414810	0.92[EUR][1000 genomes]
rs6441010	0.90[EUR][1000 genomes]
rs6441011	0.92[EUR][1000 genomes]
rs66459918	0.90[EUR][1000 genomes]
rs6769113	0.92[EUR][1000 genomes]
rs6794329	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73156544	0.88[EUR][1000 genomes]
rs73156548	0.85[EUR][1000 genomes]
rs73156551	0.88[EUR][1000 genomes]
rs73156552	0.88[EUR][1000 genomes]
rs73156561	0.88[EUR][1000 genomes]
rs7611680	0.88[EUR][1000 genomes]
rs7617369	0.88[EUR][1000 genomes]
rs7633226	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155395000-155416800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:155399800-155422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155400600-155421000	Weak transcription	Fetal Intestine Small	intestine
4	chr3:155400800-155418400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:155408800-155418600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:155409000-155419200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:155409000-155419400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:155409200-155418400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:155409200-155422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:155411000-155420600	Weak transcription	Fetal Intestine Large	intestine
11	chr3:155412600-155422400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
13	chr3:155413800-155432000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:155414000-155418600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:155414000-155420600	Weak transcription	Brain Germinal Matrix	brain
16	chr3:155414800-155419000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:155415000-155421200	Weak transcription	Stomach Mucosa	stomach
18	chr3:155415400-155419200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:155415600-155418800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:155415600-155421400	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:155416400-155418000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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