Variant report

Variant	rs6441011
Chromosome Location	chr3:155423367-155423368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1074496	0.81[EUR][1000 genomes]
rs12628990	0.92[EUR][1000 genomes]
rs16825341	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17347364	0.81[EUR][1000 genomes]
rs17348181	0.96[EUR][1000 genomes]
rs17413466	0.81[EUR][1000 genomes]
rs17414074	0.96[EUR][1000 genomes]
rs17414810	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66459918	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6769113	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794329	0.92[EUR][1000 genomes]
rs73154284	0.81[EUR][1000 genomes]
rs73154298	0.81[EUR][1000 genomes]
rs73154302	0.81[EUR][1000 genomes]
rs73156504	0.81[EUR][1000 genomes]
rs73156517	0.81[EUR][1000 genomes]
rs73156519	0.81[EUR][1000 genomes]
rs73156544	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73156548	0.93[EUR][1000 genomes]
rs73156551	0.96[EUR][1000 genomes]
rs73156552	0.96[EUR][1000 genomes]
rs73156561	0.96[EUR][1000 genomes]
rs73156578	0.92[EUR][1000 genomes]
rs7611680	0.96[EUR][1000 genomes]
rs7617369	0.96[EUR][1000 genomes]
rs7633226	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
2	chr3:155413800-155432000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:155418800-155423400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:155418800-155423400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:155419200-155423600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:155420000-155423800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:155420200-155432200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:155421400-155423400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:155421600-155423400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:155421600-155423400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:155421600-155423800	Enhancers	HMEC	breast
12	chr3:155421800-155423400	Enhancers	Brain Angular Gyrus	brain
13	chr3:155421800-155423800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:155422200-155423400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:155422200-155423400	Enhancers	Brain Substantia Nigra	brain
16	chr3:155422200-155423600	Enhancers	HepG2	liver
17	chr3:155422200-155427800	Weak transcription	Fetal Intestine Small	intestine
18	chr3:155422400-155423400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:155422400-155423400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:155422400-155423400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:155422800-155423400	Enhancers	Brain Anterior Caudate	brain
22	chr3:155423000-155423400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:155423000-155431200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:155423200-155430200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:155423200-155431400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:155423200-155431400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:155423200-155432200	Weak transcription	H1 Cell Line	embryonic stem cell

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