Variant report

Variant	rs73154268
Chromosome Location	chr3:155295821-155295822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155295394..155297546-chr3:155297564..155300199,2	MCF-7	breast:
2	chr3:155291080..155293995-chr3:155294990..155298578,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1074496	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11926902	0.98[EUR][1000 genomes]
rs11927334	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1610251	0.98[EUR][1000 genomes]
rs16825099	0.96[EUR][1000 genomes]
rs16825113	0.91[EUR][1000 genomes]
rs17346518	0.87[AFR][1000 genomes]
rs17347364	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17348181	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17413466	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17414074	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1850850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2320186	0.86[EUR][1000 genomes]
rs4389522	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60170070	0.96[EUR][1000 genomes]
rs67668024	0.91[EUR][1000 genomes]
rs73154261	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73154265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154266	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73154269	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154284	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73154298	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73154302	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73156504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73156517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73156519	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73156544	0.82[EUR][1000 genomes]
rs73156548	0.94[AMR][1000 genomes]
rs73156551	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73156552	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73156561	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7610818	0.86[EUR][1000 genomes]
rs7611680	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7617369	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7630469	0.86[EUR][1000 genomes]
rs7633226	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7640692	0.96[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:155272200-155302800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:155273400-155312800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:155275600-155311800	Weak transcription	Fetal Intestine Large	intestine
5	chr3:155275600-155312800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:155278400-155302800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:155283000-155315000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:155289600-155315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:155290200-155322200	Weak transcription	A549	lung
10	chr3:155291400-155303000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:155291800-155301800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:155294600-155299200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr3:155295000-155296200	Enhancers	Fetal Brain Male	brain
14	chr3:155295600-155296400	Enhancers	Fetal Brain Female	brain
15	chr3:155295800-155297400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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