Variant report

Variant	rs6818376
Chromosome Location	chr4:79732560-79732561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79720788..79722594-chr4:79731131..79733817,2	MCF-7	breast:
2	chr4:79727891..79730446-chr4:79730868..79733426,2	K562	blood:
3	chr4:79731165..79732753-chr4:79743062..79744642,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17003456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003467	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003497	1.00[AMR][1000 genomes]
rs17003514	0.86[AFR][1000 genomes]
rs7654012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7676020	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1011365	chr4:79714695-79779723	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1007685	chr4:79732468-79788768	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79700200-79732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:79714400-79748400	Weak transcription	Aorta	Aorta
3	chr4:79720800-79747800	Weak transcription	Osteobl	bone
4	chr4:79721200-79741400	Weak transcription	Thymus	Thymus
5	chr4:79721600-79747200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:79726600-79747800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:79727800-79748200	Weak transcription	NHEK	skin
8	chr4:79728400-79747200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:79728600-79733600	Weak transcription	Primary B cells from cord blood	blood
10	chr4:79728600-79737800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:79728600-79738200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:79728600-79747200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:79728800-79735000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr4:79729000-79747200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:79729600-79734600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:79729800-79735000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:79730000-79733600	Enhancers	Primary B cells from peripheral blood	blood
18	chr4:79730400-79741400	Weak transcription	Primary T cells from cord blood	blood
19	chr4:79730800-79733800	Enhancers	Fetal Intestine Large	intestine
20	chr4:79731000-79733400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:79731200-79732600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:79731200-79732800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr4:79731400-79732600	Enhancers	Fetal Intestine Small	intestine
24	chr4:79731400-79735200	Weak transcription	NHDF-Ad	bronchial
25	chr4:79731400-79748600	Weak transcription	Pancreas	Pancrea
26	chr4:79731600-79747400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:79731600-79748000	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:79731800-79732600	Enhancers	K562	blood
29	chr4:79731800-79736000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:79731800-79738400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:79731800-79747200	Weak transcription	Left Ventricle	heart
32	chr4:79731800-79747400	Weak transcription	Liver	Liver
33	chr4:79732000-79733200	Weak transcription	Right Atrium	heart
34	chr4:79732000-79735600	Weak transcription	Psoas Muscle	Psoas
35	chr4:79732200-79732600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:79732200-79733200	Weak transcription	Colon Smooth Muscle	Colon
37	chr4:79732200-79747000	Weak transcription	NHLF	lung
38	chr4:79732400-79734600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:79732400-79735200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:79732400-79738400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr4:79732400-79739600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:79732400-79747200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr4:79732400-79747800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:79732400-79759200	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links