Variant report

Variant	rs681946
Chromosome Location	chr1:57785798-57785799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1240441	1.00[AMR][1000 genomes]
rs1646766	1.00[AMR][1000 genomes]
rs267648	1.00[AMR][1000 genomes]
rs267649	1.00[AMR][1000 genomes]
rs269040	1.00[AMR][1000 genomes]
rs269046	1.00[AMR][1000 genomes]
rs269052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57773200-57790200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:57776600-57790200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:57780400-57787000	Weak transcription	Fetal Brain Male	brain
4	chr1:57784600-57785800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:57784600-57785800	Enhancers	Fetal Lung	lung
6	chr1:57784600-57786000	Enhancers	Duodenum Mucosa	Duodenum
7	chr1:57784800-57786000	Enhancers	Fetal Intestine Large	intestine
8	chr1:57784800-57786000	Enhancers	Fetal Intestine Small	intestine
9	chr1:57785200-57790000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:57785200-57793800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:57785400-57790400	Weak transcription	Fetal Brain Female	brain
12	chr1:57785600-57785800	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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