Variant report

Variant	rs6821408
Chromosome Location	chr4:6759426-6759427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10222913	0.92[AFR][1000 genomes]
rs10222981	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6847692	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6854458	0.82[AFR][1000 genomes]
rs7679408	0.82[AFR][1000 genomes]
rs7695099	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6749600-6762400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:6752200-6760800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:6753000-6760400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:6753800-6764800	Weak transcription	Hela-S3	cervix
5	chr4:6754600-6762000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:6755400-6760400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:6755400-6763400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:6757200-6760400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:6757200-6769400	Weak transcription	Pancreas	Pancrea
10	chr4:6757200-6769400	Weak transcription	Right Atrium	heart
11	chr4:6757400-6760400	Weak transcription	A549	lung
12	chr4:6757400-6761800	Weak transcription	Brain Angular Gyrus	brain
13	chr4:6757600-6760400	Weak transcription	HepG2	liver
14	chr4:6759200-6759600	Weak transcription	Placenta	Placenta
15	chr4:6759200-6760400	Weak transcription	K562	blood
16	chr4:6759200-6762600	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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