Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:6753877..6756919-chr4:6761128..6766161,4	K562	blood:
2	chr4:6732282..6733961-chr4:6759815..6762188,2	K562	blood:
3	chr4:6759340..6762124-chr4:6764165..6768519,5	K562	blood:
4	chr4:6735087..6737129-chr4:6760446..6763061,2	K562	blood:
5	chr4:6761532..6764273-chr4:6769526..6771673,2	MCF-7	breast:
6	chr4:6753663..6758255-chr4:6759229..6763983,8	K562	blood:
7	chr4:6761695..6763600-chr4:6831406..6833760,2	MCF-7	breast:
8	chr4:6750912..6753065-chr4:6761609..6763645,2	K562	blood:

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10222913	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10222981	0.87[AFR][1000 genomes]
rs28503682	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28731448	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6815299	1.00[EUR][1000 genomes]
rs6821408	0.82[AFR][1000 genomes]
rs6822655	0.84[AFR][1000 genomes]
rs6847692	0.89[AFR][1000 genomes]
rs73796327	1.00[EUR][1000 genomes]
rs7669275	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7679408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7695355	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6749600-6762400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:6753800-6764800	Weak transcription	Hela-S3	cervix
3	chr4:6754600-6762000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:6755400-6763400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:6757200-6769400	Weak transcription	Pancreas	Pancrea
6	chr4:6757200-6769400	Weak transcription	Right Atrium	heart
7	chr4:6757400-6761800	Weak transcription	Brain Angular Gyrus	brain
8	chr4:6759200-6762600	Weak transcription	Fetal Thymus	thymus
9	chr4:6759600-6766600	Enhancers	Placenta	Placenta
10	chr4:6760800-6762600	Weak transcription	HepG2	liver
11	chr4:6760800-6763200	Weak transcription	HMEC	breast
12	chr4:6760800-6764000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:6760800-6764200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:6760800-6765200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:6761000-6762000	Weak transcription	HSMMtube	muscle
16	chr4:6761000-6762600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:6761000-6762800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:6761000-6763200	Weak transcription	HSMM	muscle
19	chr4:6761000-6764800	Weak transcription	K562	blood
20	chr4:6761000-6765000	Weak transcription	A549	lung

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