Variant report

Variant	rs28503682
Chromosome Location	chr4:6764420-6764421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6753877..6756919-chr4:6761128..6766161,4	K562	blood:
2	chr4:6749995..6753611-chr4:6763962..6766629,4	K562	blood:
3	chr4:6762561..6768449-chr4:6782490..6785602,9	MCF-7	breast:
4	chr4:6748686..6750732-chr4:6763495..6765403,2	MCF-7	breast:
5	chr4:6747773..6749709-chr4:6762366..6765040,3	K562	blood:
6	chr4:6747206..6749273-chr4:6763310..6765040,2	K562	blood:
7	chr4:6761834..6766024-chr4:6766286..6770008,4	MCF-7	breast:
8	chr4:6732855..6734515-chr4:6762970..6765514,2	MCF-7	breast:
9	chr4:6759340..6762124-chr4:6764165..6768519,5	K562	blood:
10	chr4:6754218..6757243-chr4:6763885..6768388,4	MCF-7	breast:
11	chr4:6763567..6765599-chr4:6780068..6781973,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000170871	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10222913	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10222981	0.81[AFR][1000 genomes]
rs28731448	0.82[AMR][1000 genomes]
rs6815299	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6822655	0.81[AFR][1000 genomes]
rs6847692	0.86[AFR][1000 genomes]
rs6854458	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73796327	1.00[EUR][1000 genomes]
rs7669275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7679408	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7695355	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6753800-6764800	Weak transcription	Hela-S3	cervix
2	chr4:6757200-6769400	Weak transcription	Pancreas	Pancrea
3	chr4:6757200-6769400	Weak transcription	Right Atrium	heart
4	chr4:6759600-6766600	Enhancers	Placenta	Placenta
5	chr4:6760800-6765200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:6761000-6764800	Weak transcription	K562	blood
7	chr4:6761000-6765000	Weak transcription	A549	lung
8	chr4:6762600-6766000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:6763000-6766200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:6763200-6764600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:6763200-6765000	Enhancers	HMEC	breast
12	chr4:6763600-6765400	Weak transcription	HSMM	muscle
13	chr4:6763600-6769200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:6763600-6773000	Enhancers	Fetal Thymus	thymus
15	chr4:6763800-6765000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:6763800-6765000	Weak transcription	HepG2	liver
17	chr4:6764000-6764800	Enhancers	NHEK	skin
18	chr4:6764000-6765200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:6764000-6766000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:6764000-6766200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:6764200-6765000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:6764200-6767800	Weak transcription	Primary T cells from cord blood	blood
23	chr4:6764200-6769200	Weak transcription	HSMMtube	muscle
24	chr4:6764400-6764800	Weak transcription	Placenta Amnion	Placenta Amnion

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