Variant report

Variant	rs28731448
Chromosome Location	chr4:6762603-6762604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6753877..6756919-chr4:6761128..6766161,4	K562	blood:
2	chr4:6762561..6768449-chr4:6782490..6785602,9	MCF-7	breast:
3	chr4:6747773..6749709-chr4:6762366..6765040,3	K562	blood:
4	chr4:6735087..6737129-chr4:6760446..6763061,2	K562	blood:
5	chr4:6761532..6764273-chr4:6769526..6771673,2	MCF-7	breast:
6	chr4:6753663..6758255-chr4:6759229..6763983,8	K562	blood:
7	chr4:6761695..6763600-chr4:6831406..6833760,2	MCF-7	breast:
8	chr4:6761834..6766024-chr4:6766286..6770008,4	MCF-7	breast:
9	chr4:6750912..6753065-chr4:6761609..6763645,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000170871	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10222913	1.00[AMR][1000 genomes]
rs28503682	0.82[AMR][1000 genomes]
rs6854458	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7669275	0.82[AMR][1000 genomes]
rs7679408	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7695099	0.94[AFR][1000 genomes]
rs7695355	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6753800-6764800	Weak transcription	Hela-S3	cervix
2	chr4:6755400-6763400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:6757200-6769400	Weak transcription	Pancreas	Pancrea
4	chr4:6757200-6769400	Weak transcription	Right Atrium	heart
5	chr4:6759600-6766600	Enhancers	Placenta	Placenta
6	chr4:6760800-6763200	Weak transcription	HMEC	breast
7	chr4:6760800-6764000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:6760800-6764200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:6760800-6765200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:6761000-6762800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:6761000-6763200	Weak transcription	HSMM	muscle
12	chr4:6761000-6764800	Weak transcription	K562	blood
13	chr4:6761000-6765000	Weak transcription	A549	lung
14	chr4:6762000-6762800	Weak transcription	Brain Angular Gyrus	brain
15	chr4:6762000-6763400	Enhancers	Primary hematopoietic stem cells	blood
16	chr4:6762000-6763600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:6762000-6764200	Enhancers	HSMMtube	muscle
18	chr4:6762400-6763200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:6762400-6763800	Enhancers	Brain Hippocampus Middle	brain
20	chr4:6762600-6762800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr4:6762600-6763000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:6762600-6763000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr4:6762600-6763200	Enhancers	Brain Substantia Nigra	brain
24	chr4:6762600-6763200	Enhancers	Fetal Thymus	thymus
25	chr4:6762600-6763200	Enhancers	HepG2	liver
26	chr4:6762600-6763400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr4:6762600-6763400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:6762600-6763400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr4:6762600-6763600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:6762600-6763800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:6762600-6763800	Enhancers	Dnd41	blood
32	chr4:6762600-6766000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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