Variant report

Variant	rs6822088
Chromosome Location	chr4:90764310-90764311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10025915	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10433953	0.92[ASN][1000 genomes]
rs10516845	0.92[ASN][1000 genomes]
rs11931062	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11935469	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11944331	0.92[ASN][1000 genomes]
rs2737029	0.92[ASN][1000 genomes]
rs28781297	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35495602	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3775427	0.92[ASN][1000 genomes]
rs3775433	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3775434	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3775439	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3796661	0.92[ASN][1000 genomes]
rs3822089	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822090	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3857061	0.92[ASN][1000 genomes]
rs3899608	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4031753	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58054215	0.92[ASN][1000 genomes]
rs60031383	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6826785	0.91[ASN][1000 genomes]
rs6834765	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7655611	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7690873	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7698672	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv879536	chr4:90678541-90775212	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90759600-90771600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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