Variant report

Variant	rs2737029
Chromosome Location	chr4:90711770-90711771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10003708	0.81[ASN][1000 genomes]
rs10025915	1.00[ASN][1000 genomes]
rs10033209	0.83[ASN][1000 genomes]
rs10433953	0.99[ASN][1000 genomes]
rs1045722	0.83[ASN][1000 genomes]
rs10516844	0.80[ASN][1000 genomes]
rs10516845	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs11097238	0.81[JPT][hapmap]
rs11931062	1.00[ASN][1000 genomes]
rs11931074	0.80[ASN][1000 genomes]
rs11935469	1.00[ASN][1000 genomes]
rs11944331	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs11945223	0.81[ASN][1000 genomes]
rs12648141	0.83[ASN][1000 genomes]
rs17016071	0.83[ASN][1000 genomes]
rs28393675	0.81[ASN][1000 genomes]
rs28412513	0.83[ASN][1000 genomes]
rs28613708	0.82[ASN][1000 genomes]
rs28781297	1.00[ASN][1000 genomes]
rs35495602	0.97[ASN][1000 genomes]
rs35541731	0.83[ASN][1000 genomes]
rs356165	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs356203	0.83[ASN][1000 genomes]
rs3756054	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs3775422	0.81[ASN][1000 genomes]
rs3775423	0.83[ASN][1000 genomes]
rs3775424	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs3775427	1.00[ASN][1000 genomes]
rs3775433	1.00[ASN][1000 genomes]
rs3775434	1.00[ASN][1000 genomes]
rs3775439	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3796661	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs3822086	0.83[ASN][1000 genomes]
rs3822089	1.00[ASN][1000 genomes]
rs3822090	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3857051	0.81[ASN][1000 genomes]
rs3857052	0.82[ASN][1000 genomes]
rs3857053	0.83[ASN][1000 genomes]
rs3857057	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs3857058	0.83[ASN][1000 genomes]
rs3857059	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs3857061	1.00[ASN][1000 genomes]
rs3899608	1.00[ASN][1000 genomes]
rs4031753	1.00[ASN][1000 genomes]
rs4088093	0.83[ASN][1000 genomes]
rs4088094	0.83[ASN][1000 genomes]
rs58054215	1.00[ASN][1000 genomes]
rs60031383	1.00[ASN][1000 genomes]
rs61032876	0.81[ASN][1000 genomes]
rs6818319	0.80[ASN][1000 genomes]
rs6822088	0.92[ASN][1000 genomes]
rs6826785	0.99[ASN][1000 genomes]
rs6834765	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs7356297	0.82[JPT][hapmap]
rs7436973	0.82[ASN][1000 genomes]
rs7655611	1.00[ASN][1000 genomes]
rs7655792	0.81[ASN][1000 genomes]
rs7661330	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7675290	0.83[ASN][1000 genomes]
rs7681312	0.80[ASN][1000 genomes]
rs7681815	0.80[ASN][1000 genomes]
rs7684318	0.83[ASN][1000 genomes]
rs7690873	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs7698672	1.00[ASN][1000 genomes]
rs8180209	0.83[ASN][1000 genomes]
rs8180214	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv879536	chr4:90678541-90775212	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90687200-90718400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:90703000-90712600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:90705600-90718400	Weak transcription	Brain Angular Gyrus	brain
4	chr4:90706400-90733800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:90707800-90721400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:90709600-90732600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:90709800-90735400	Weak transcription	Ovary	ovary
8	chr4:90710000-90712600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:90710000-90718000	Weak transcription	HMEC	breast
10	chr4:90710200-90715800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:90710200-90718200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:90711000-90712000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:90711200-90711800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:90711400-90712000	Strong transcription	HUVEC	blood vessel
15	chr4:90711600-90725200	Weak transcription	Fetal Lung	lung

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