Variant report

Variant	rs6822376
Chromosome Location	chr4:98047071-98047072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17026251	1.00[EUR][1000 genomes]
rs59019057	1.00[EUR][1000 genomes]
rs72884310	1.00[EUR][1000 genomes]
rs72884319	1.00[EUR][1000 genomes]
rs72884323	1.00[AMR][1000 genomes]
rs72884325	1.00[AMR][1000 genomes]
rs72884333	1.00[EUR][1000 genomes]
rs72884348	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72884351	1.00[AMR][1000 genomes]
rs72884363	1.00[AMR][1000 genomes]
rs72884372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72884375	1.00[AMR][1000 genomes]
rs72884377	1.00[AMR][1000 genomes]
rs72884382	1.00[AMR][1000 genomes]
rs7690146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7690871	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3370026	chr4:98044823-98067071	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98043800-98048600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:98045200-98049600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:98046000-98047800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr4:98046400-98047200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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