Variant report
| Variant | rs72884325 |
|---|---|
| Chromosome Location | chr4:98038765-98038766 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr4:98038712-98038909 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253170 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs6822376 | 1.00[AMR][1000 genomes] |
| rs72874642 | 0.81[AFR][1000 genomes] |
| rs72880581 | 0.87[AFR][1000 genomes] |
| rs72880583 | 0.92[AFR][1000 genomes] |
| rs72884323 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72884348 | 1.00[AMR][1000 genomes] |
| rs72884351 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72884363 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72884372 | 1.00[AMR][1000 genomes] |
| rs72884375 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72884377 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72884382 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7690146 | 1.00[AMR][1000 genomes] |
| rs7690871 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879640 | chr4:97711707-98697586 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1002766 | chr4:98006688-98128416 | Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv537192 | chr4:98006688-98128416 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
