Variant report
Variant | rs72880583 |
---|---|
Chromosome Location | chr4:97979972-97979973 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs72874604 | 1.00[AMR][1000 genomes] |
rs72874624 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72874642 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72878962 | 1.00[AMR][1000 genomes] |
rs72878988 | 1.00[AMR][1000 genomes] |
rs72880581 | 0.94[AFR][1000 genomes] |
rs72884323 | 0.92[AFR][1000 genomes] |
rs72884325 | 0.92[AFR][1000 genomes] |
rs72884351 | 0.92[AFR][1000 genomes] |
rs72884363 | 0.90[AFR][1000 genomes] |
rs72884375 | 0.90[AFR][1000 genomes] |
rs72884377 | 0.90[AFR][1000 genomes] |
rs72884382 | 0.88[AFR][1000 genomes] |
rs72891475 | 1.00[AMR][1000 genomes] |
rs72891476 | 1.00[AMR][1000 genomes] |
rs7690871 | 0.90[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv879640 | chr4:97711707-98697586 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv1005103 | chr4:97914293-98011695 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv293123 | chr4:97975614-97980854 | ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
4 | esv3335619 | chr4:97979629-97982227 | ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:97979600-97980000 | ZNF genes & repeats | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |