Variant report

Variant	rs72874642
Chromosome Location	chr4:97964732-97964733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs72874604	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874649	0.81[AFR][1000 genomes]
rs72874654	0.81[AFR][1000 genomes]
rs72878962	1.00[AMR][1000 genomes]
rs72878988	1.00[AMR][1000 genomes]
rs72880581	0.83[AFR][1000 genomes]
rs72880583	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72884323	0.81[AFR][1000 genomes]
rs72884325	0.81[AFR][1000 genomes]
rs72884351	0.81[AFR][1000 genomes]
rs72891475	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891476	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005103	chr4:97914293-98011695	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97959400-97965600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:97960000-97966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:97964200-97965800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:97964200-97966000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:97964400-97965800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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