Variant report

Variant	rs72874624
Chromosome Location	chr4:97959285-97959286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs72874604	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874642	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878962	1.00[AMR][1000 genomes]
rs72878988	1.00[AMR][1000 genomes]
rs72880583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891475	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891476	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005103	chr4:97914293-98011695	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97958400-97959400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:97958600-97959400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:97958600-97959600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:97958600-97959600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:97958600-97960000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:97958800-97959400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr4:97958800-97959400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:97958800-97959600	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr4:97959000-97959600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:97959000-97959600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:97959000-97959600	Active TSS	HepG2	liver
12	chr4:97959000-97960000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr4:97959200-97959400	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr4:97959200-97959600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:97959200-97959600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:97959200-97959800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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