Variant report

Variant	rs72878962
Chromosome Location	chr4:97912119-97912120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs72874604	1.00[AMR][1000 genomes]
rs72874624	1.00[AMR][1000 genomes]
rs72874642	1.00[AMR][1000 genomes]
rs72878977	0.98[AFR][1000 genomes]
rs72878988	1.00[AMR][1000 genomes]
rs72880583	1.00[AMR][1000 genomes]
rs72891475	1.00[AMR][1000 genomes]
rs72891476	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97911400-97914000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:97911800-97912200	Enhancers	Fetal Intestine Large	intestine
3	chr4:97911800-97913000	Enhancers	Fetal Intestine Small	intestine
4	chr4:97912000-97912400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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