Variant report

Variant	rs6822579
Chromosome Location	chr4:173645085-173645086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10866355	0.87[ASN][1000 genomes]
rs1106651	0.88[ASN][1000 genomes]
rs11132959	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722378	0.92[ASN][1000 genomes]
rs12499966	0.90[EUR][1000 genomes]
rs12501331	0.86[ASN][1000 genomes]
rs12502034	0.90[EUR][1000 genomes]
rs12505471	0.90[EUR][1000 genomes]
rs12509227	0.90[EUR][1000 genomes]
rs12509744	0.89[ASN][1000 genomes]
rs12510770	0.90[EUR][1000 genomes]
rs12510844	0.86[EUR][1000 genomes]
rs12511707	0.90[EUR][1000 genomes]
rs12511715	0.86[EUR][1000 genomes]
rs12643395	0.84[EUR][1000 genomes]
rs12645440	0.89[EUR][1000 genomes]
rs12651320	0.83[EUR][1000 genomes]
rs13107045	0.92[ASN][1000 genomes]
rs1370581	0.92[ASN][1000 genomes]
rs1437828	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1437840	0.86[EUR][1000 genomes]
rs1437842	0.83[ASN][1000 genomes]
rs1548346	0.92[ASN][1000 genomes]
rs1548347	0.88[ASN][1000 genomes]
rs17308839	0.81[ASN][1000 genomes]
rs17308944	0.84[ASN][1000 genomes]
rs1898554	0.85[ASN][1000 genomes]
rs1946797	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2043781	0.86[EUR][1000 genomes]
rs2118439	0.86[ASN][1000 genomes]
rs2118441	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2118442	0.92[ASN][1000 genomes]
rs34567973	0.92[ASN][1000 genomes]
rs35184155	0.89[ASN][1000 genomes]
rs35280724	0.92[ASN][1000 genomes]
rs35345168	0.92[ASN][1000 genomes]
rs36081927	0.90[EUR][1000 genomes]
rs4522845	0.90[EUR][1000 genomes]
rs4608790	0.92[ASN][1000 genomes]
rs4695991	0.86[EUR][1000 genomes]
rs4696014	0.90[EUR][1000 genomes]
rs4696015	0.92[ASN][1000 genomes]
rs4696016	0.92[ASN][1000 genomes]
rs58774009	0.85[EUR][1000 genomes]
rs62330792	0.86[EUR][1000 genomes]
rs62330815	0.90[EUR][1000 genomes]
rs62330816	0.90[EUR][1000 genomes]
rs62330818	0.87[EUR][1000 genomes]
rs62330819	0.90[EUR][1000 genomes]
rs62330820	0.90[EUR][1000 genomes]
rs6553645	0.91[ASN][1000 genomes]
rs6812449	0.90[EUR][1000 genomes]
rs6819441	0.92[ASN][1000 genomes]
rs6821734	0.83[EUR][1000 genomes]
rs6838201	0.90[EUR][1000 genomes]
rs7664183	0.90[EUR][1000 genomes]
rs7672787	0.92[ASN][1000 genomes]
rs7691448	0.92[ASN][1000 genomes]
rs7694886	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173645000-173645400	ZNF genes & repeats	A549	lung

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