Variant report

Variant	rs6553645
Chromosome Location	chr4:173650538-173650539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10000589	0.88[EUR][1000 genomes]
rs10029787	0.88[EUR][1000 genomes]
rs10034980	0.88[EUR][1000 genomes]
rs10866355	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10866357	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10866358	0.88[EUR][1000 genomes]
rs10866359	0.84[EUR][1000 genomes]
rs10866361	0.90[EUR][1000 genomes]
rs10866362	0.91[EUR][1000 genomes]
rs10866363	0.87[EUR][1000 genomes]
rs10866364	0.90[EUR][1000 genomes]
rs10866365	0.90[EUR][1000 genomes]
rs1106651	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11132959	0.91[ASN][1000 genomes]
rs11132964	0.87[EUR][1000 genomes]
rs11132965	0.87[EUR][1000 genomes]
rs11132966	0.87[EUR][1000 genomes]
rs11132967	0.87[EUR][1000 genomes]
rs11132968	0.87[EUR][1000 genomes]
rs11132969	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11132970	0.86[EUR][1000 genomes]
rs1158684	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11722378	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11725400	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11938551	0.88[EUR][1000 genomes]
rs11939302	0.86[EUR][1000 genomes]
rs11942645	0.87[EUR][1000 genomes]
rs12498347	0.87[EUR][1000 genomes]
rs12501331	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12501554	0.85[EUR][1000 genomes]
rs12502339	0.85[EUR][1000 genomes]
rs12509744	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12642442	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12643742	0.87[EUR][1000 genomes]
rs12649403	0.83[ASN][1000 genomes]
rs13107045	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13134194	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13144747	0.87[EUR][1000 genomes]
rs1347705	0.89[EUR][1000 genomes]
rs1347706	0.89[EUR][1000 genomes]
rs1370581	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1437842	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1548346	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1548347	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17058876	0.89[EUR][1000 genomes]
rs17058878	0.89[EUR][1000 genomes]
rs17308839	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17308944	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1898554	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2043783	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2083133	0.88[EUR][1000 genomes]
rs2083134	0.88[EUR][1000 genomes]
rs2118439	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2118442	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28436909	0.86[EUR][1000 genomes]
rs28550329	0.86[EUR][1000 genomes]
rs34464405	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34567973	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34807167	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35184155	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35280724	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35345168	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4420960	0.87[EUR][1000 genomes]
rs4422401	0.87[EUR][1000 genomes]
rs4431209	0.87[EUR][1000 genomes]
rs4449390	0.90[EUR][1000 genomes]
rs4546224	0.90[EUR][1000 genomes]
rs4608790	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4695817	0.89[EUR][1000 genomes]
rs4696015	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4696016	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4696022	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4696028	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55850929	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56069434	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59569156	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6553658	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67786990	0.89[EUR][1000 genomes]
rs6819441	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6819460	0.83[EUR][1000 genomes]
rs6822579	0.91[ASN][1000 genomes]
rs6842382	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6855645	0.82[ASN][1000 genomes]
rs7435993	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7438724	0.94[EUR][1000 genomes]
rs7672787	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7679802	0.88[EUR][1000 genomes]
rs7681189	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7685030	0.88[EUR][1000 genomes]
rs7685421	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7691448	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9992822	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173649600-173651200	Weak transcription	A549	lung

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