Variant report

Variant	rs56069434
Chromosome Location	chr4:173709004-173709005
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10000589	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10029787	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10034980	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10866355	0.83[AMR][1000 genomes]
rs10866357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10866358	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10866359	0.88[EUR][1000 genomes]
rs10866361	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10866362	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10866363	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10866364	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10866365	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1106651	0.82[AMR][1000 genomes]
rs11132964	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11132965	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11132966	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11132967	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11132968	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11132969	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11132970	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11722378	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11725400	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11938551	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11939302	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11942645	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12498347	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12501331	0.82[AMR][1000 genomes]
rs12501554	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12502339	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12509744	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12642442	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12643742	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13107045	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13134194	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13144747	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1347705	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1347706	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1370581	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1548346	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1548347	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17058876	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17058878	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17308839	0.81[AMR][1000 genomes]
rs2043783	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2083133	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2083134	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2118439	0.82[AMR][1000 genomes]
rs2118442	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28436909	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28550329	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34464405	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34567973	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34807167	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35184155	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35280724	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35345168	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4420960	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4422401	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4431209	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4449390	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4546224	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4608790	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4695817	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4696015	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4696016	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4696022	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4696028	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59569156	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6553645	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6553658	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67786990	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6819441	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6819460	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6842382	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7435993	0.84[EUR][1000 genomes]
rs7438724	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7672787	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7679802	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7681189	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685030	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7685421	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691448	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9992822	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173706000-173709400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:173708400-173714800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:173708600-173709200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr4:173708600-173714000	Weak transcription	Fetal Kidney	kidney
5	chr4:173708800-173709400	Enhancers	Monocytes-CD14+_RO01746	blood

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