Variant report

Variant	rs2083134
Chromosome Location	chr4:173689811-173689812
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10000589	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034980	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866357	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10866358	0.89[EUR][1000 genomes]
rs10866359	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10866361	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10866362	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10866363	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866364	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10866365	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11132964	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132965	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132966	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132967	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132968	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132969	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11132970	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722378	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11725400	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11938551	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11939302	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942645	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498347	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501554	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502339	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509744	0.89[EUR][1000 genomes]
rs12642442	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12643742	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645440	0.89[ASN][1000 genomes]
rs13107045	0.89[EUR][1000 genomes]
rs13134194	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13144747	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370581	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1548346	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1548347	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17058876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17058878	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043783	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2083133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118442	0.89[EUR][1000 genomes]
rs28436909	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28550329	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34464405	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34567973	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34807167	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35184155	0.88[EUR][1000 genomes]
rs35280724	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35345168	0.89[EUR][1000 genomes]
rs4420960	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4422401	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4431209	1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4449390	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4546224	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4608790	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4695817	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4696015	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4696016	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4696022	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4696028	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56069434	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59569156	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6553645	0.88[EUR][1000 genomes]
rs6553658	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67786990	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819441	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6819460	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842382	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7435993	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7438724	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7672787	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7679802	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681189	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7685030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685421	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7691448	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9992822	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173689800-173690600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links