Variant report

Variant	rs12501554
Chromosome Location	chr4:173708658-173708659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173702658..173704418-chr4:173706596..173708903,2	K562	blood:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10000589	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024969	0.84[JPT][hapmap]
rs10025150	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10025544	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs10029787	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031656	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10034980	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034993	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs10520242	0.82[JPT][hapmap]
rs10866356	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs10866357	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10866358	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10866359	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10866361	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10866362	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10866363	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866364	0.80[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10866365	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11132955	0.82[JPT][hapmap]
rs11132964	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132965	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132966	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132967	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132968	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132969	0.81[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11132970	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722378	0.87[EUR][1000 genomes]
rs11725400	0.81[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11932974	1.00[JPT][hapmap]
rs11938551	0.81[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11939302	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942645	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498347	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509744	0.86[EUR][1000 genomes]
rs12511707	0.84[JPT][hapmap]
rs12513314	0.83[JPT][hapmap]
rs12642442	0.81[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12643395	0.84[JPT][hapmap]
rs12643742	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645440	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12646897	1.00[JPT][hapmap]
rs12651320	0.82[JPT][hapmap]
rs13107045	0.86[EUR][1000 genomes]
rs13134194	0.81[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13144747	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347698	0.83[JPT][hapmap]
rs1347702	0.82[JPT][hapmap]
rs1347705	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347706	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370581	0.87[EUR][1000 genomes]
rs1540468	0.84[JPT][hapmap]
rs1540472	0.82[JPT][hapmap]
rs1548346	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1548347	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17058683	0.84[JPT][hapmap]
rs17058752	0.84[JPT][hapmap]
rs17058876	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17058878	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17058886	1.00[JPT][hapmap]
rs1946797	0.82[JPT][hapmap]
rs2043782	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2043783	0.81[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2083133	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083134	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118442	0.86[EUR][1000 genomes]
rs28436909	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28550329	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34464405	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34567973	0.87[EUR][1000 genomes]
rs34807167	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35184155	0.85[EUR][1000 genomes]
rs35280724	0.87[EUR][1000 genomes]
rs35345168	0.86[EUR][1000 genomes]
rs4420960	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4422401	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4431209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4449390	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4546224	0.80[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4608790	0.87[EUR][1000 genomes]
rs4695817	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4695932	0.83[JPT][hapmap]
rs4696014	0.83[JPT][hapmap]
rs4696015	0.87[EUR][1000 genomes]
rs4696016	0.87[EUR][1000 genomes]
rs4696022	0.81[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4696028	0.81[CEU][hapmap];0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56069434	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59569156	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6553645	0.85[EUR][1000 genomes]
rs6553657	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6553658	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67786990	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817631	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6819441	0.85[EUR][1000 genomes]
rs6819460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827154	0.89[JPT][hapmap]
rs6842382	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6842805	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs6844200	0.81[JPT][hapmap]
rs7376615	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7378115	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7435993	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7438724	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7661180	0.91[CEU][hapmap];0.86[YRI][hapmap]
rs7672787	0.86[EUR][1000 genomes]
rs7679802	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681189	0.81[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7685030	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685421	0.81[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7688630	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7689021	0.91[CEU][hapmap];0.83[YRI][hapmap]
rs7691448	0.87[EUR][1000 genomes]
rs837196	0.82[JPT][hapmap]
rs9312534	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9992822	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997085	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173706000-173709400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:173706800-173708800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr4:173706800-173709000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:173706800-173709000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:173706800-173709000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:173707000-173709000	Enhancers	Primary hematopoietic stem cells	blood
7	chr4:173708400-173714800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:173708600-173709200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr4:173708600-173714000	Weak transcription	Fetal Kidney	kidney

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