Variant report

Variant	rs11132955
Chromosome Location	chr4:173617268-173617269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10016145	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs10024969	1.00[JPT][hapmap]
rs10025150	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs10025544	0.82[JPT][hapmap]
rs10031656	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs10034993	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs1017667	0.82[CEU][hapmap];0.80[TSI][hapmap]
rs10434280	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs10520242	0.86[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10866355	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10866356	0.82[MEX][hapmap]
rs10866363	0.85[CEU][hapmap];0.80[JPT][hapmap]
rs1106651	0.95[EUR][1000 genomes]
rs11132954	0.84[JPT][hapmap]
rs11132959	0.81[CHD][hapmap]
rs11132964	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap]
rs11132967	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap]
rs11132968	0.82[JPT][hapmap]
rs11132970	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs1158684	0.85[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs11725400	0.82[MEX][hapmap]
rs11932974	0.82[JPT][hapmap]
rs11942645	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap]
rs12498347	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs12499508	0.82[CEU][hapmap];0.80[TSI][hapmap]
rs12499966	0.82[ASN][1000 genomes]
rs12501331	0.96[EUR][1000 genomes]
rs12501554	0.82[JPT][hapmap]
rs12502034	0.81[ASN][1000 genomes]
rs12502339	0.82[JPT][hapmap]
rs12505471	0.81[ASN][1000 genomes]
rs12509227	0.81[ASN][1000 genomes]
rs12510770	0.81[ASN][1000 genomes]
rs12511707	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12513314	1.00[JPT][hapmap]
rs12642442	0.82[MEX][hapmap]
rs12643395	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12643742	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs12643816	0.94[CHD][hapmap];0.94[JPT][hapmap]
rs12645440	0.82[JPT][hapmap]
rs12646897	0.82[JPT][hapmap]
rs12647340	0.89[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs12649403	0.82[EUR][1000 genomes]
rs12649426	0.89[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs12651320	0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13107045	0.81[EUR][1000 genomes]
rs13134194	0.82[MEX][hapmap]
rs13144747	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs13146563	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1347698	1.00[JPT][hapmap]
rs1347700	0.89[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs1347702	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs1347705	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs1437828	0.87[ASN][1000 genomes]
rs1437834	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs1437837	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs1437842	0.81[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1437843	0.80[GIH][hapmap]
rs1455132	0.82[CEU][hapmap]
rs1540468	1.00[JPT][hapmap]
rs1540470	0.89[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap]
rs1540472	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1548346	0.81[CHB][hapmap];0.87[CHD][hapmap];0.82[MEX][hapmap]
rs1580110	0.82[CEU][hapmap]
rs17058683	0.88[JPT][hapmap]
rs17058752	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17058802	0.94[CHD][hapmap];0.94[JPT][hapmap]
rs17058876	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs17058886	0.82[JPT][hapmap]
rs17307651	0.81[CHB][hapmap];0.81[CHD][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap]
rs17308839	0.85[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17308944	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1898554	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes]
rs1946797	0.94[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2043782	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs2118439	0.88[CEU][hapmap];0.83[CHB][hapmap];0.96[EUR][1000 genomes]
rs2118441	0.83[ASN][1000 genomes]
rs2118442	0.81[EUR][1000 genomes]
rs35184155	0.80[EUR][1000 genomes]
rs35345168	0.81[EUR][1000 genomes]
rs35640087	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[TSI][hapmap]
rs36081927	0.85[ASN][1000 genomes]
rs4420960	0.88[CEU][hapmap]
rs4470604	0.81[CHB][hapmap]
rs4522845	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4546224	0.82[MEX][hapmap]
rs4569731	0.81[CHD][hapmap]
rs4608790	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs4695771	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs4695932	0.80[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4696006	0.81[CHB][hapmap]
rs4696014	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4696028	0.82[MEX][hapmap]
rs55850929	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58774009	0.84[ASN][1000 genomes]
rs61077359	0.83[ASN][1000 genomes]
rs62330815	0.81[ASN][1000 genomes]
rs62330816	0.81[ASN][1000 genomes]
rs62330818	0.85[ASN][1000 genomes]
rs62330819	0.81[ASN][1000 genomes]
rs62330820	0.81[ASN][1000 genomes]
rs6553645	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6553657	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs6812449	0.81[ASN][1000 genomes]
rs6817631	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs6819460	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs6821734	0.89[ASN][1000 genomes]
rs6822571	0.81[CHB][hapmap]
rs6827154	1.00[JPT][hapmap]
rs6839760	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs6842805	0.81[JPT][hapmap]
rs6844200	0.85[JPT][hapmap]
rs6855645	0.81[CHB][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs7376615	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs7378115	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs7435993	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7438724	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs748347	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs7659511	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs7664183	0.81[ASN][1000 genomes]
rs7681189	0.82[MEX][hapmap]
rs7688630	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs7689021	0.83[CEU][hapmap]
rs7694886	0.81[ASN][1000 genomes]
rs837196	0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9312527	0.94[JPT][hapmap]
rs9312534	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs9992822	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs9997085	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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