Variant report

Variant	rs1540470
Chromosome Location	chr4:173614590-173614591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10016145	0.81[CHB][hapmap]
rs10866355	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10866356	0.81[CEU][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs10866357	0.85[CEU][hapmap]
rs10866361	0.81[CEU][hapmap]
rs10866362	0.81[CEU][hapmap]
rs10866364	0.80[CEU][hapmap];0.80[JPT][hapmap]
rs1106651	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11132951	0.82[CEU][hapmap];0.80[TSI][hapmap]
rs11132952	0.85[CEU][hapmap];0.86[CHB][hapmap];0.82[TSI][hapmap]
rs11132954	0.94[JPT][hapmap]
rs11132955	0.89[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap]
rs11132959	0.92[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs11132964	0.82[MEX][hapmap]
rs11132967	0.82[MEX][hapmap]
rs11132969	0.81[CEU][hapmap]
rs1158684	0.96[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11722378	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11725400	0.81[CEU][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs11938551	0.81[CEU][hapmap]
rs11942645	0.82[MEX][hapmap]
rs12501331	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12509744	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12642131	0.85[CEU][hapmap];0.86[CHB][hapmap];0.82[TSI][hapmap]
rs12642442	0.81[CEU][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs12647340	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs12649403	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12649426	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13107045	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13134194	0.81[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs13146563	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1347700	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1347702	0.82[CHD][hapmap]
rs1370581	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1437834	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1437837	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1437842	0.89[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1540466	0.84[CHD][hapmap];0.89[JPT][hapmap]
rs1548346	0.81[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.89[ASN][1000 genomes]
rs1548347	0.85[ASN][1000 genomes]
rs17058876	0.82[MEX][hapmap]
rs17307651	0.89[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap]
rs17308839	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17308944	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1898554	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2043783	0.81[CEU][hapmap]
rs2118439	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2118442	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34567973	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35184155	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35280724	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35345168	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4470604	0.85[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4476577	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs4546224	0.81[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap]
rs4569731	0.92[CHD][hapmap];0.89[JPT][hapmap]
rs4608790	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4695771	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs4695799	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs4695878	0.81[CEU][hapmap]
rs4696006	0.85[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs4696015	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4696016	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4696022	0.81[CEU][hapmap]
rs4696028	0.81[CEU][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs55850929	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6553645	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6553658	0.81[CEU][hapmap]
rs6817631	0.82[MEX][hapmap]
rs6819441	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6822571	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap]
rs6822579	0.81[ASN][1000 genomes]
rs6855645	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6858309	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[TSI][hapmap]
rs7435993	0.80[EUR][1000 genomes]
rs7438724	0.84[CHB][hapmap]
rs748347	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7658615	0.85[CEU][hapmap]
rs7659511	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7672787	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7681189	0.81[CEU][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap]
rs7685421	0.81[CEU][hapmap]
rs7691448	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs837196	0.81[CHD][hapmap]
rs9312534	0.82[MEX][hapmap]
rs9997085	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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