Variant report

Variant	rs11132951
Chromosome Location	chr4:173508157-173508158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1017667	0.89[CEU][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap]
rs10434280	0.92[CEU][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap]
rs11132952	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap]
rs1158684	0.85[CEU][hapmap];0.86[CHB][hapmap];0.80[TSI][hapmap]
rs12499508	0.89[CEU][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap]
rs12503858	0.81[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs12642131	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap]
rs12647340	0.82[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap]
rs12649426	0.82[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];0.80[TSI][hapmap]
rs13102637	0.81[CEU][hapmap];0.82[CHB][hapmap];0.84[TSI][hapmap]
rs13123441	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs13124556	0.87[EUR][1000 genomes]
rs13144240	0.87[EUR][1000 genomes]
rs13146563	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs1347700	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[GIH][hapmap];0.80[TSI][hapmap]
rs1437834	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs1437837	0.82[CHB][hapmap]
rs1437842	0.86[CHB][hapmap]
rs1455132	0.89[CEU][hapmap]
rs1540470	0.82[CEU][hapmap];0.80[TSI][hapmap]
rs1548346	0.86[CHB][hapmap];0.81[GIH][hapmap]
rs1580110	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs17234582	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs17307651	0.92[CEU][hapmap];0.86[CHB][hapmap];0.87[TSI][hapmap]
rs17308839	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs17308944	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs1898554	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs2118439	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs35640087	0.85[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4470604	0.86[CHB][hapmap]
rs4476577	0.92[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4608790	0.86[CHB][hapmap]
rs4692921	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs4695771	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[GIH][hapmap];0.84[TSI][hapmap]
rs4695799	0.85[CHB][hapmap]
rs4695878	0.87[CEU][hapmap]
rs4696006	0.86[CHB][hapmap]
rs6822571	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs6839760	0.89[CEU][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap]
rs6855645	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[GIH][hapmap];0.84[TSI][hapmap]
rs6858309	0.92[CEU][hapmap];0.91[CHB][hapmap];0.80[CHD][hapmap];0.95[TSI][hapmap]
rs748347	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs7658615	0.96[CEU][hapmap]
rs7659511	0.82[CEU][hapmap];0.82[CHB][hapmap];0.80[TSI][hapmap]
rs7672525	0.81[CEU][hapmap];0.82[CHB][hapmap];0.87[TSI][hapmap]
rs7696315	0.81[CEU][hapmap];0.82[CHB][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11132951	SAP30	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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