Variant report

Variant	rs35640087
Chromosome Location	chr4:173523018-173523019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10016145	0.82[CHB][hapmap]
rs10024969	0.85[CHB][hapmap]
rs1017667	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs10434280	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap]
rs10520242	0.85[CHB][hapmap]
rs11132951	0.85[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs11132952	0.89[CEU][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap]
rs11132955	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[TSI][hapmap]
rs12499508	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs12503858	0.83[EUR][1000 genomes]
rs12511707	0.82[CHB][hapmap]
rs12513314	0.85[CHB][hapmap]
rs12642131	0.89[CEU][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs12643395	0.85[CHB][hapmap]
rs12643816	0.85[CHB][hapmap]
rs12651320	0.85[CHB][hapmap]
rs13123441	0.82[EUR][1000 genomes]
rs13124556	0.82[EUR][1000 genomes]
rs13144240	0.83[EUR][1000 genomes]
rs1455132	0.96[CEU][hapmap]
rs1540468	0.85[CHB][hapmap]
rs1580110	0.96[CEU][hapmap];0.90[CHB][hapmap]
rs17058683	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs17058802	0.85[CHB][hapmap]
rs17234582	0.83[EUR][1000 genomes]
rs17307651	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs180146	0.84[CHD][hapmap]
rs1946797	0.85[CHB][hapmap]
rs4476577	0.85[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4692921	0.83[EUR][1000 genomes]
rs4695771	0.85[CEU][hapmap]
rs4695932	0.81[JPT][hapmap]
rs6822571	0.85[CEU][hapmap]
rs6827154	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs6839760	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap]
rs6855645	0.85[CEU][hapmap]
rs6858309	0.85[CEU][hapmap];0.84[JPT][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap]
rs7438724	0.80[CHB][hapmap]
rs7658615	0.89[CEU][hapmap]
rs7672525	0.80[TSI][hapmap]
rs7696315	0.80[TSI][hapmap]
rs837196	0.85[CHB][hapmap]
rs9312527	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173522600-173527000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:173522800-173523800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:173522800-173524000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:173522800-173524400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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