Variant report

Variant	rs6827154
Chromosome Location	chr4:173658264-173658265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10016145	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs10024969	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10025150	0.89[JPT][hapmap]
rs10025544	0.89[JPT][hapmap]
rs10031656	0.88[JPT][hapmap]
rs10034993	0.88[JPT][hapmap]
rs10520242	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10866363	0.88[JPT][hapmap]
rs11132954	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs11132955	1.00[JPT][hapmap]
rs11132959	0.88[CHB][hapmap];0.90[EUR][1000 genomes]
rs11132964	0.87[JPT][hapmap]
rs11132967	0.87[JPT][hapmap]
rs11132968	0.89[JPT][hapmap]
rs11132970	0.89[JPT][hapmap]
rs1158684	0.82[JPT][hapmap]
rs11932974	0.87[JPT][hapmap]
rs11942645	0.87[JPT][hapmap]
rs12498347	0.88[JPT][hapmap]
rs12499966	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12501554	0.89[JPT][hapmap]
rs12502034	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12502339	0.88[JPT][hapmap]
rs12505471	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12509227	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12510770	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12510844	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12511707	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511715	0.96[EUR][1000 genomes]
rs12513314	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12643395	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12643742	0.88[JPT][hapmap]
rs12643816	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12645440	0.87[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12646897	0.88[JPT][hapmap]
rs12647340	0.83[JPT][hapmap]
rs12649426	0.83[JPT][hapmap]
rs12651320	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13144747	0.88[JPT][hapmap]
rs13146563	0.84[JPT][hapmap]
rs1347698	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1347700	0.83[JPT][hapmap]
rs1347702	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1347705	0.88[JPT][hapmap]
rs1437828	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1437840	0.85[CHB][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1437842	0.83[JPT][hapmap]
rs1540466	0.90[CHB][hapmap]
rs1540468	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1540472	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17058683	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17058705	0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs17058736	0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs17058752	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17058802	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs17058876	0.87[JPT][hapmap]
rs17058886	0.89[JPT][hapmap]
rs17308944	0.84[JPT][hapmap]
rs1898554	0.84[JPT][hapmap]
rs1946797	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2043781	0.96[EUR][1000 genomes]
rs2043782	0.88[JPT][hapmap]
rs2118439	0.83[CHB][hapmap]
rs2118441	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35640087	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs36081927	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4420960	0.89[JPT][hapmap]
rs4522845	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4569731	0.90[CHB][hapmap]
rs4608790	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4695771	0.83[JPT][hapmap]
rs4695932	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4695991	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4696014	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58774009	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61077359	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62329189	0.84[AMR][1000 genomes]
rs62330792	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62330815	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62330816	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62330818	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62330819	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62330820	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6553657	0.89[JPT][hapmap]
rs6812449	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6817631	0.87[JPT][hapmap]
rs6819460	0.87[JPT][hapmap]
rs6821734	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6822579	0.90[EUR][1000 genomes]
rs6838201	0.97[EUR][1000 genomes]
rs6842805	0.87[JPT][hapmap]
rs6844200	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7376615	0.88[JPT][hapmap]
rs7378115	0.89[JPT][hapmap]
rs7435993	0.87[ASN][1000 genomes]
rs7438724	0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs747493	0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs748347	0.84[JPT][hapmap]
rs7659511	0.83[JPT][hapmap]
rs7664183	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7688630	0.89[JPT][hapmap]
rs7694886	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs837196	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9312527	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9312534	0.81[JPT][hapmap]
rs9992822	0.89[JPT][hapmap]
rs9997085	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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