Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12499966	0.83[AMR][1000 genomes]
rs12502034	0.83[AMR][1000 genomes]
rs12502278	0.85[EUR][1000 genomes]
rs12505471	0.83[AMR][1000 genomes]
rs12509227	0.81[AMR][1000 genomes]
rs12510770	0.83[AMR][1000 genomes]
rs12511707	0.81[AMR][1000 genomes]
rs12643395	0.81[AMR][1000 genomes]
rs12645440	0.85[AMR][1000 genomes]
rs1551664	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1551665	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2125601	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36081927	0.81[AMR][1000 genomes]
rs4522845	0.83[AMR][1000 genomes]
rs4696014	0.83[AMR][1000 genomes]
rs58774009	0.81[AMR][1000 genomes]
rs62329191	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62330815	0.83[AMR][1000 genomes]
rs62330816	0.83[AMR][1000 genomes]
rs62330819	0.81[AMR][1000 genomes]
rs62330820	0.81[AMR][1000 genomes]
rs6812449	0.83[AMR][1000 genomes]
rs750375	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs750376	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7664183	0.83[AMR][1000 genomes]
rs7694886	0.83[AMR][1000 genomes]
rs7699074	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173708400-173714800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:173708600-173714000	Weak transcription	Fetal Kidney	kidney

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