Variant report

Variant	rs750376
Chromosome Location	chr4:173731762-173731763
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11932974	0.82[MEX][hapmap]
rs12502278	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs12643816	0.82[MEX][hapmap]
rs12645440	0.82[MEX][hapmap]
rs12646897	0.80[CEU][hapmap]
rs1347702	0.82[MEX][hapmap]
rs1540466	0.82[MEX][hapmap]
rs1551664	0.89[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1551665	1.00[ASW][hapmap];0.89[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17058802	0.82[MEX][hapmap]
rs1946797	0.82[MEX][hapmap]
rs2125601	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4569731	0.82[MEX][hapmap]
rs4696029	0.91[MEX][hapmap]
rs4696031	0.81[EUR][1000 genomes]
rs4696032	0.89[CEU][hapmap]
rs62329189	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62329191	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6841423	0.81[EUR][1000 genomes]
rs750375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654998	0.81[EUR][1000 genomes]
rs7681059	0.91[MEX][hapmap]
rs7699074	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173715000-173740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173729800-173732400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:173730000-173732600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:173730200-173732000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:173730200-173732000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:173730200-173732400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:173730400-173732000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:173730600-173731800	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:173730600-173732000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:173730600-173732000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr4:173730600-173732000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:173730600-173732200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:173730600-173732600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:173730800-173732000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr4:173730800-173734400	Weak transcription	Fetal Stomach	stomach
16	chr4:173730800-173734600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:173731000-173731800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:173731000-173732000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:173731200-173731800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr4:173731200-173731800	Enhancers	Brain Cingulate Gyrus	brain
21	chr4:173731200-173732000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:173731400-173731800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:173731400-173731800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:173731400-173732000	Enhancers	Brain Hippocampus Middle	brain
25	chr4:173731400-173747400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:173731600-173734200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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