Variant report

Variant	rs7699074
Chromosome Location	chr4:173721364-173721365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10520242	0.82[MEX][hapmap]
rs11932974	0.86[MEX][hapmap]
rs11947615	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs12499966	0.80[AMR][1000 genomes]
rs12502034	0.80[AMR][1000 genomes]
rs12502278	0.88[CEU][hapmap]
rs12505471	0.80[AMR][1000 genomes]
rs12510770	0.80[AMR][1000 genomes]
rs12643816	0.86[MEX][hapmap]
rs12645440	0.90[MEX][hapmap];0.80[AMR][1000 genomes]
rs12651320	0.82[MEX][hapmap]
rs1347702	0.86[MEX][hapmap]
rs1540466	0.86[MEX][hapmap]
rs1540472	0.82[MEX][hapmap]
rs1551664	0.88[CEU][hapmap];0.80[CHD][hapmap];0.84[GIH][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1551665	0.88[CEU][hapmap];0.80[CHD][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17058802	0.86[MEX][hapmap]
rs1946797	0.86[MEX][hapmap]
rs2125601	0.88[CEU][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4522845	0.80[AMR][1000 genomes]
rs4569731	0.86[MEX][hapmap]
rs4696014	0.80[AMR][1000 genomes]
rs4696032	0.88[CEU][hapmap]
rs62329189	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62329191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6812449	0.80[AMR][1000 genomes]
rs750375	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs750376	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7664183	0.80[AMR][1000 genomes]
rs7694886	0.80[AMR][1000 genomes]
rs837196	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173715000-173740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173721200-173722800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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